Strain Fitness in Pseudomonas putida KT2440 around PP_0111

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
115,594	+		PP_0109	0.89	+1.4
115,683	+				-3.1
115,683	+				+0.5
115,683	+				-0.7
115,684	-				+0.9
115,684	-				+0.3
115,684	-				-0.2
115,711	+				-0.5
115,712	-				-0.7
115,718	-				+1.6
115,718	-				+0.6
115,718	-				-0.4
115,740	+				-0.0
115,741	-				+0.1
116,075	-		PP_0110	0.42	-0.7
116,094	+		PP_0110	0.44	+1.1
116,095	-		PP_0110	0.44	+1.0
116,287	-		PP_0110	0.66	-0.5
116,348	+		PP_0110	0.73	-0.0
116,348	+		PP_0110	0.73	+0.1
116,348	+		PP_0110	0.73	-1.0
116,358	+		PP_0110	0.74	-2.0
116,359	-		PP_0110	0.74	-0.9
116,359	-		PP_0110	0.74	+0.7
116,395	-		PP_0110	0.78	-1.6
116,395	-		PP_0110	0.78	+0.2
116,438	-		PP_0110	0.83	-2.9
116,478	+		PP_0110	0.87	+0.0
116,478	+		PP_0110	0.87	+0.3
116,479	-		PP_0110	0.87	+0.5
116,479	-		PP_0110	0.87	+0.0
116,479	-		PP_0110	0.87	-1.0
116,479	-		PP_0110	0.87	+1.7
116,483	+		PP_0110	0.88	-0.8
116,484	-		PP_0110	0.88	+1.3
116,520	+				-0.6
116,521	-				-0.7
116,525	+				+0.3
116,526	-				+0.1
116,532	+				+0.3
116,532	+				+0.8
116,533	-				+0.9
116,571	+				+0.1
116,572	-				-0.0
116,572	-				-2.6
116,587	+				-1.3
116,588	-				-1.1
116,588	-				-0.4
116,588	-				+1.0
116,588	-				-1.5
116,668	+		PP_0111	0.13	-2.8
116,668	+		PP_0111	0.13	-0.5
116,668	+		PP_0111	0.13	-2.2
116,668	+		PP_0111	0.13	-1.8
116,668	+		PP_0111	0.13	-0.7
116,668	+		PP_0111	0.13	-2.7
116,828	+		PP_0111	0.38	-0.2
116,828	+		PP_0111	0.38	-1.4
116,828	+		PP_0111	0.38	-1.4
116,829	-		PP_0111	0.38	-0.5
116,829	-		PP_0111	0.38	-2.3
116,834	+		PP_0111	0.39	-2.3
116,834	+		PP_0111	0.39	-0.2
116,835	-		PP_0111	0.39	+0.1
116,835	-		PP_0111	0.39	-3.3
116,835	-		PP_0111	0.39	-3.1
116,835	-		PP_0111	0.39	-2.0
116,835	-		PP_0111	0.39	-2.2
116,835	-		PP_0111	0.39	+1.0
116,835	-		PP_0111	0.39	-0.5
116,945	-		PP_0111	0.56	-3.0
116,975	+		PP_0111	0.61	+1.0
116,975	+		PP_0111	0.61	-2.9
116,975	+		PP_0111	0.61	-2.7
116,975	+		PP_0111	0.61	-2.9
116,985	-		PP_0111	0.63	-2.2
117,093	-		PP_0111	0.80	-2.0
117,094	+		PP_0111	0.80	-0.1
117,095	-		PP_0111	0.80	-3.7
117,237	-				+0.3
117,237	-				+0.4
117,256	+				-0.5
117,256	+				+0.6
117,257	-				-0.5
117,257	-				-0.7
117,257	-				-3.8
117,295	+				-1.6
117,305	+				+0.6
117,305	+				+0.2
117,306	-				+0.1
117,343	-				+0.3
117,450	+		PP_0112	0.18	-0.4
117,451	-		PP_0112	0.18	-1.7
117,451	-		PP_0112	0.18	+1.4
117,516	+		PP_0112	0.26	+0.1
117,517	-		PP_0112	0.26	+0.7
117,517	-		PP_0112	0.26	-0.5
117,542	+		PP_0112	0.30	-0.7
117,542	+		PP_0112	0.30	+0.2
117,542	+		PP_0112	0.30	-1.1
117,543	-		PP_0112	0.30	+1.9
117,774	+		PP_0112	0.60	-2.1
117,774	+		PP_0112	0.60	-1.7
117,775	-		PP_0112	0.60	-2.9
117,775	-		PP_0112	0.60	+1.1
117,775	-		PP_0112	0.60	+0.1
117,852	+		PP_0112	0.70	-1.9
117,853	-		PP_0112	0.70	-0.3
117,918	+		PP_0112	0.78	+0.4
117,919	-		PP_0112	0.78	-1.7
117,919	-		PP_0112	0.78	-0.2
117,947	+		PP_0112	0.82	+0.6
118,022	-				+1.1
118,150	+				-0.9
118,150	+				-0.7
118,151	-				+1.4
118,151	-				-0.8
118,154	+				-0.2
118,209	+				-1.4
118,209	+				-3.5