Strain Fitness in Pseudomonas putida KT2440 around PP_0083

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
91,447	+				-0.0
91,447	+				-0.5
91,448	-				+0.8
91,494	+				-2.4
91,535	-				+0.3
91,547	-				-0.6
91,621	+				-3.5
91,622	-				-3.3
91,853	+		PP_0082	0.35	-1.3
91,853	+		PP_0082	0.35	-3.0
91,853	+		PP_0082	0.35	-2.7
91,854	-		PP_0082	0.35	-1.2
91,856	+		PP_0082	0.35	-0.9
92,072	+		PP_0082	0.62	-3.5
92,072	+		PP_0082	0.62	-2.7
92,072	+		PP_0082	0.62	-1.1
92,072	+		PP_0082	0.62	-3.5
92,072	+		PP_0082	0.62	-2.8
92,073	-		PP_0082	0.62	-2.7
92,073	-		PP_0082	0.62	-3.4
92,073	-		PP_0082	0.62	-3.5
92,073	-		PP_0082	0.62	-3.1
92,073	-		PP_0082	0.62	-3.4
92,073	-		PP_0082	0.62	-3.2
92,073	-		PP_0082	0.62	-3.4
92,073	-		PP_0082	0.62	-3.7
92,075	+		PP_0082	0.62	-0.6
92,423	+				-1.2
92,424	-				-1.8
92,424	-				-2.5
92,599	+		PP_0083	0.18	-2.1
92,599	+		PP_0083	0.18	-3.4
92,626	+		PP_0083	0.21	-1.6
92,627	-		PP_0083	0.21	-3.2
92,716	+		PP_0083	0.28	-2.2
92,717	-		PP_0083	0.28	-1.9
92,717	-		PP_0083	0.28	-3.4
92,717	-		PP_0083	0.28	-2.0
92,717	-		PP_0083	0.28	-4.4
92,745	+		PP_0083	0.30	-2.5
92,785	-		PP_0083	0.34	-2.3
92,785	-		PP_0083	0.34	-2.8
93,013	+		PP_0083	0.52	-2.7
93,014	-		PP_0083	0.52	-2.6
93,014	-		PP_0083	0.52	-3.4
93,172	+		PP_0083	0.65	-1.2
93,172	+		PP_0083	0.65	-0.2
93,173	-		PP_0083	0.65	-3.3
93,173	-		PP_0083	0.65	-0.7
93,173	-		PP_0083	0.65	-2.0
93,394	+		PP_0083	0.84	-0.9
93,394	+				-0.2
93,434	-		PP_0083	0.87	-3.5
93,526	+				-2.3
93,526	+				-2.0
93,577	+				-3.0
93,610	+				-1.6
93,611	-				-1.7
93,631	+				-1.3
93,631	+				-3.0
93,631	+				-0.2
93,631	+				-1.4
93,632	-				-0.4
93,636	+				-3.7
94,031	-		PP_0084	0.36	-1.5
94,142	+		PP_0084	0.49	-0.2
94,142	+		PP_0084	0.49	-0.9
94,143	-		PP_0084	0.49	+0.2
94,143	-		PP_0084	0.49	+0.3
94,358	+		PP_0084	0.73	-0.2
94,358	+		PP_0084	0.73	-0.6
94,358	+		PP_0084	0.73	-2.1
94,382	+		PP_0084	0.76	-0.5
94,383	-		PP_0084	0.76	+1.3
94,383	-		PP_0084	0.76	+0.4
94,383	-		PP_0084	0.76	-2.3
94,383	-		PP_0084	0.76	-0.3
94,383	-		PP_0084	0.76	-3.2
94,383	-		PP_0084	0.76	+0.3
94,385	+		PP_0084	0.76	+1.1
94,386	-		PP_0084	0.76	+0.5
94,386	-		PP_0084	0.76	+0.5
94,386	-		PP_0084	0.76	-1.1
94,386	-		PP_0084	0.76	+0.3
94,495	+		PP_0084	0.88	-0.3
94,496	-		PP_0084	0.88	-0.6