Strain Fitness in Pseudomonas putida KT2440 around PP_5322

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
6,066,882	+		PP_5321	0.77	+1.9
6,066,882	+		PP_5321	0.77	+1.9
6,066,882	+		PP_5321	0.77	+1.7
6,066,882	+		PP_5321	0.77	+1.4
6,066,883	-		PP_5321	0.77	+2.3
6,066,883	-		PP_5321	0.77	+1.6
6,067,008	+		PP_5321	0.86	+2.4
6,067,009	-		PP_5321	0.87	+0.7
6,067,015	+		PP_5321	0.87	+1.5
6,067,016	-		PP_5321	0.87	-0.3
6,067,139	+				-0.3
6,067,139	+				+0.9
6,067,140	-				+1.7
6,067,140	-				+1.8
6,067,140	-				+2.0
6,067,140	-				+1.4
6,067,263	+				+1.2
6,067,263	+				+1.3
6,067,278	+				+0.6
6,067,375	+				-4.6
6,067,376	-				-3.6
6,067,378	+				-3.2
6,067,378	+				-4.3
6,067,379	-				-2.6
6,067,392	+				-1.7
6,067,393	-				-2.9
6,067,489	+				-2.1
6,067,569	-		PP_5322	0.16	-3.3
6,067,569	-		PP_5322	0.16	-2.7
6,067,736	+		PP_5322	0.28	-2.4
6,067,736	+		PP_5322	0.28	-1.7
6,067,737	-		PP_5322	0.28	-3.8
6,067,737	-		PP_5322	0.28	-3.7
6,067,737	-		PP_5322	0.28	-3.6
6,067,737	-		PP_5322	0.28	-3.6
6,067,826	+		PP_5322	0.35	-0.6
6,067,827	-		PP_5322	0.35	+0.6
6,067,836	-		PP_5322	0.36	-1.3
6,067,836	-		PP_5322	0.36	-2.8
6,067,859	+		PP_5322	0.37	-1.7
6,067,860	-		PP_5322	0.37	-2.9
6,067,860	-		PP_5322	0.37	-4.2
6,067,860	-		PP_5322	0.37	-3.3
6,068,156	+		PP_5322	0.60	-1.3
6,068,156	+		PP_5322	0.60	-1.9
6,068,156	+		PP_5322	0.60	-2.5
6,068,326	+		PP_5322	0.72	-3.3
6,068,326	+		PP_5322	0.72	-2.4
6,068,576	+				-4.3
6,068,576	+				-1.8
6,068,577	-				-1.2
6,068,766	+				+1.5
6,068,771	+				+0.7
6,068,842	+		PP_5323	0.15	+0.7
6,068,842	+		PP_5323	0.15	+0.2
6,068,925	+		PP_5323	0.24	+0.8
6,068,925	+		PP_5323	0.24	+2.0
6,068,926	-		PP_5323	0.24	+0.0
6,068,926	-		PP_5323	0.24	+0.0
6,068,926	-		PP_5323	0.24	-1.0
6,068,926	-		PP_5323	0.24	+0.9
6,068,926	-		PP_5323	0.24	+1.1
6,068,927	+		PP_5323	0.24	+0.1
6,068,927	+		PP_5323	0.24	+1.6
6,068,927	+		PP_5323	0.24	+0.9
6,068,927	+		PP_5323	0.24	+0.0
6,068,927	+		PP_5323	0.24	+1.2
6,068,927	+		PP_5323	0.24	+0.6
6,068,928	-		PP_5323	0.24	+0.5
6,069,079	-		PP_5323	0.41	+0.7
6,069,222	+		PP_5323	0.57	+1.1
6,069,301	+		PP_5323	0.66	+0.1
6,069,302	-		PP_5323	0.66	+0.3
6,069,353	+		PP_5323	0.72	+1.9
6,069,359	+		PP_5323	0.72	-0.1
6,069,429	-				-1.3
6,069,429	-		PP_5323	0.80	+0.4
6,069,429	-		PP_5323	0.80	+1.4
6,069,504	+		PP_5323	0.88	+1.6
6,069,537	+				+0.8
6,069,537	+				+0.4
6,069,537	+				+0.7
6,069,538	-				+0.1
6,069,538	-				-0.4
6,069,538	-				+1.1
6,069,538	-				-1.5
6,069,628	+				+1.7
6,069,628	+				-0.8
6,069,629	-				+0.2
6,069,629	-				+0.3
6,069,629	-				+0.7
6,069,629	-				+0.2
6,069,645	+				+0.4
6,069,646	-				+0.9
6,069,659	-				+1.4
6,069,659	-				+1.4
6,069,663	+				-0.6
6,069,663	+				+1.0
6,069,664	-				+0.3
6,069,668	-				+0.2
6,069,668	-				+0.8
6,069,668	-				+0.9
6,069,668	-				-0.2
6,069,668	-				+0.1