Strain Fitness in Pseudomonas putida KT2440 around PP_5117

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
5,837,727	+		PP_5116	0.38	-1.8
5,837,727	+		PP_5116	0.38	-0.1
5,837,728	-		PP_5116	0.39	+0.6
5,837,796	+		PP_5116	0.43	-2.0
5,837,796	+		PP_5116	0.43	-1.1
5,837,809	-		PP_5116	0.44	+0.6
5,837,845	+		PP_5116	0.47	+0.1
5,837,846	-		PP_5116	0.47	-0.8
5,837,846	-		PP_5116	0.47	+0.2
5,837,846	-		PP_5116	0.47	+0.3
5,837,846	-		PP_5116	0.47	+0.9
5,837,846	-		PP_5116	0.47	-0.9
5,837,960	+		PP_5116	0.55	+0.2
5,838,051	-		PP_5116	0.62	+0.1
5,838,051	-		PP_5116	0.62	+0.6
5,838,160	+		PP_5116	0.70	+0.9
5,838,161	-		PP_5116	0.70	-0.4
5,838,179	+		PP_5116	0.71	-0.3
5,838,179	+		PP_5116	0.71	+0.9
5,838,179	+		PP_5116	0.71	-0.7
5,838,179	+		PP_5116	0.71	-3.2
5,838,180	-		PP_5116	0.71	-2.1
5,838,260	+		PP_5116	0.77	+0.9
5,838,261	-		PP_5116	0.77	-1.4
5,838,395	+		PP_5116	0.87	+1.3
5,838,395	+		PP_5116	0.87	-1.1
5,838,396	-		PP_5116	0.87	+0.5
5,838,433	+		PP_5116	0.90	-0.5
5,838,434	-				+1.0
5,838,434	-				+0.2
5,838,434	-				-0.6
5,838,445	-				+0.1
5,838,512	+				+0.3
5,838,512	+				-1.8
5,838,513	-				-0.1
5,838,513	-				+0.2
5,838,513	-				-0.8
5,838,577	+				+0.7
5,838,603	+				-0.2
5,838,604	-				-0.6
5,838,604	-				+0.3
5,838,961	+		PP_5117	0.33	-0.2
5,839,037	-		PP_5117	0.41	-0.6
5,839,037	-		PP_5117	0.41	+0.4
5,839,037	-		PP_5117	0.41	-0.5
5,839,037	-		PP_5117	0.41	+0.3
5,839,067	+		PP_5117	0.44	+0.2
5,839,067	+		PP_5117	0.44	+0.9
5,839,067	+		PP_5117	0.44	+0.2
5,839,068	-		PP_5117	0.44	+1.4
5,839,068	-		PP_5117	0.44	+0.2
5,839,068	-		PP_5117	0.44	+0.3
5,839,068	-		PP_5117	0.44	-0.6
5,839,068	-		PP_5117	0.44	-0.9
5,839,078	+		PP_5117	0.45	+0.5
5,839,189	+		PP_5117	0.56	-0.5
5,839,189	+		PP_5117	0.56	+1.5
5,839,189	+		PP_5117	0.56	-0.2
5,839,190	-		PP_5117	0.56	-0.5
5,839,222	+		PP_5117	0.60	+1.2
5,839,222	+		PP_5117	0.60	-2.3
5,839,336	-		PP_5117	0.71	-1.0
5,839,378	+		PP_5117	0.75	-0.7
5,839,378	+		PP_5117	0.75	-0.4
5,839,379	-		PP_5117	0.75	+0.6
5,839,379	-		PP_5117	0.75	-0.6
5,839,379	-		PP_5117	0.75	-0.7
5,839,381	+		PP_5117	0.76	+0.1
5,839,382	-		PP_5117	0.76	-0.1
5,839,428	+		PP_5117	0.80	+1.2
5,839,428	+		PP_5117	0.80	+0.6
5,839,428	+		PP_5117	0.80	+0.1
5,839,429	-		PP_5117	0.80	+0.7
5,839,496	+		PP_5117	0.87	+1.2
5,839,496	+		PP_5117	0.87	+1.3
5,839,496	+		PP_5117	0.87	+0.1
5,839,497	-		PP_5117	0.87	-0.4
5,839,558	-				-0.2
5,839,558	-				+0.7
5,839,576	+				+0.2
5,839,579	+				-1.2
5,839,580	-				+0.3
5,839,617	+				+0.7
5,839,618	-				-0.1
5,839,621	+				-1.6
5,839,622	-				+1.1
5,839,787	+				-2.0
5,839,787	+				-2.2
5,839,788	-				-1.3
5,839,788	-				-1.6
5,839,788	-				-0.1
5,839,862	+		PP_5118	0.16	-0.9
5,839,862	+		PP_5118	0.16	-0.2
5,839,862	+		PP_5118	0.16	-1.1
5,839,863	-		PP_5118	0.16	-0.4
5,839,863	-		PP_5118	0.16	-1.0
5,839,918	+		PP_5118	0.22	-0.3
5,839,918	+		PP_5118	0.22	-0.4
5,839,918	+		PP_5118	0.22	-1.3
5,839,918	+		PP_5118	0.22	+0.6
5,839,918	+		PP_5118	0.22	-1.7
5,839,918	+		PP_5118	0.22	-0.4
5,839,918	+				+0.3
5,839,919	-		PP_5118	0.23	-0.4
5,839,919	-		PP_5118	0.23	-1.6
5,839,992	+		PP_5118	0.31	+0.7
5,839,992	+		PP_5118	0.31	+0.7
5,839,992	+		PP_5118	0.31	-1.5
5,839,992	+		PP_5118	0.31	+0.2
5,839,993	-		PP_5118	0.31	-2.4
5,840,255	-		PP_5118	0.62	-1.0
5,840,448	+		PP_5118	0.84	-0.6
5,840,449	-		PP_5118	0.85	-1.2
5,840,462	+		PP_5118	0.86	+0.1
5,840,462	+		PP_5118	0.86	-1.9
5,840,463	-		PP_5118	0.86	-2.5
5,840,463	-		PP_5118	0.86	+0.7
5,840,478	-		PP_5118	0.88	-2.1
5,840,478	-		PP_5118	0.88	-0.2