Strain Fitness in Pseudomonas putida KT2440 around PP_5003

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
5,698,648	+				-1.8
5,698,649	-				+0.1
5,698,700	-				-1.3
5,698,834	-				+0.3
5,698,834	-				-0.5
5,698,834	-				+0.2
5,698,834	-				-0.3
5,698,937	+		PP_5002	0.16	-0.5
5,699,138	+		PP_5002	0.69	-0.4
5,699,139	-		PP_5002	0.69	-2.8
5,699,344	+				+0.3
5,699,344	+				+0.4
5,699,345	-				-1.5
5,699,431	+				+0.3
5,699,449	+				-0.2
5,699,449	+				-0.6
5,699,449	+				+0.8
5,699,493	+				-1.3
5,699,521	-				+0.2
5,699,521	-				-4.7
5,699,528	+				-1.0
5,699,528	+				-1.9
5,699,528	+				-3.3
5,699,529	-				-2.8
5,699,529	-				-0.8
5,699,548	+				-2.6
5,699,548	+				-1.6
5,699,548	+				-2.1
5,699,549	-				-2.9
5,699,791	-		PP_5003	0.16	-2.6
5,699,799	+		PP_5003	0.16	-3.1
5,700,108	+		PP_5003	0.35	-2.2
5,700,139	-				+0.1
5,700,207	+		PP_5003	0.41	-0.9
5,700,207	+		PP_5003	0.41	-1.3
5,700,208	-		PP_5003	0.41	-1.4
5,700,208	-		PP_5003	0.41	-3.9
5,700,208	-		PP_5003	0.41	-0.2
5,700,208	-		PP_5003	0.41	-1.7
5,700,330	+				-0.7
5,700,428	+		PP_5003	0.54	-2.5
5,700,429	-		PP_5003	0.54	-3.8
5,700,447	+		PP_5003	0.55	-1.5
5,700,447	+		PP_5003	0.55	-2.2
5,700,447	+		PP_5003	0.55	-1.1
5,700,577	-		PP_5003	0.63	-0.3
5,700,577	-		PP_5003	0.63	-3.8
5,700,655	-		PP_5003	0.67	-4.1
5,700,670	-		PP_5003	0.68	-3.3
5,700,670	-		PP_5003	0.68	+0.2
5,700,852	+				+0.1
5,700,852	+		PP_5003	0.79	-1.2
5,700,853	-		PP_5003	0.79	-3.8
5,700,853	-		PP_5003	0.79	-2.9
5,700,853	-		PP_5003	0.79	-2.7
5,700,853	-		PP_5003	0.79	-0.3
5,700,853	-		PP_5003	0.79	-1.2
5,700,940	+		PP_5003	0.84	-0.1
5,700,941	-		PP_5003	0.84	-1.4
5,701,151	+				-2.3
5,701,152	-				-1.2
5,701,155	+				-2.7
5,701,155	+				-1.2
5,701,155	+				-1.2
5,701,155	+				-0.2
5,701,156	-				-3.3
5,701,156	-				-1.7
5,701,156	-				-3.1
5,701,156	-				-1.4
5,701,156	-				-2.4
5,701,185	+				-1.9
5,701,185	+				-1.6
5,701,185	+				-1.9
5,701,186	-				-2.6
5,701,186	-				-1.2
5,701,205	+				+0.7
5,701,242	+				-0.7
5,701,243	-				+1.0
5,701,367	-		PP_5004	0.12	-0.7
5,701,472	-		PP_5004	0.24	-2.7
5,701,533	-		PP_5004	0.31	+0.1
5,701,533	-		PP_5004	0.31	-0.5
5,701,541	+		PP_5004	0.32	-1.7
5,701,660	-		PP_5004	0.46	-0.3
5,701,713	-		PP_5004	0.53	-3.6
5,701,754	+		PP_5004	0.57	-0.3
5,701,755	-		PP_5004	0.58	-1.7
5,701,755	-		PP_5004	0.58	+0.4
5,701,833	-		PP_5004	0.67	-0.3
5,701,835	+		PP_5004	0.67	-0.8
5,701,835	+		PP_5004	0.67	-0.0
5,701,835	+		PP_5004	0.67	-0.2
5,701,836	-		PP_5004	0.67	+0.2
5,701,986	+		PP_5004	0.85	-0.3
5,701,986	+		PP_5004	0.85	+0.5
5,701,986	+		PP_5004	0.85	+1.0
5,701,987	-		PP_5004	0.85	-2.4