Strain Fitness in Pseudomonas putida KT2440 around PP_4619

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
5,240,347	+				+0.1
5,240,347	+				+0.2
5,240,347	+				+0.0
5,240,348	-				+1.3
5,240,348	-				+1.2
5,240,349	+				+0.5
5,240,349	+				+0.8
5,240,349	+				-0.3
5,240,350	-				-2.1
5,240,350	-				+0.9
5,240,350	-				-0.7
5,240,410	+				+1.3
5,240,411	-				-0.5
5,240,411	-				+0.4
5,240,411	-				-0.5
5,240,414	-				-0.5
5,240,433	+				+0.2
5,240,584	+		PP_4618	0.18	-0.1
5,240,585	-		PP_4618	0.18	+0.5
5,240,611	+		PP_4618	0.21	-0.6
5,240,611	+		PP_4618	0.21	-0.9
5,240,612	-		PP_4618	0.21	-0.3
5,240,612	-		PP_4618	0.21	-0.4
5,240,612	-		PP_4618	0.21	-0.5
5,240,673	+		PP_4618	0.29	-1.2
5,240,673	+		PP_4618	0.29	-0.0
5,240,673	+		PP_4618	0.29	-1.3
5,240,673	+		PP_4618	0.29	-2.0
5,240,674	-				-0.2
5,240,674	-		PP_4618	0.29	+0.1
5,240,713	+		PP_4618	0.34	-1.7
5,240,714	-		PP_4618	0.34	+0.6
5,240,786	-		PP_4618	0.43	+0.2
5,240,786	-		PP_4618	0.43	+1.1
5,241,015	-		PP_4618	0.71	+0.0
5,241,087	+		PP_4618	0.80	+0.7
5,241,109	-		PP_4618	0.83	+0.0
5,241,387	+		PP_4619	0.23	-3.5
5,241,388	-				-0.2
5,241,388	-		PP_4619	0.24	-0.7
5,241,388	-		PP_4619	0.24	-2.2
5,241,642	+		PP_4619	0.64	-3.2
5,241,657	+		PP_4619	0.66	-1.4
5,241,741	-		PP_4619	0.79	-2.1
5,241,741	-		PP_4619	0.79	-2.8
5,241,744	+		PP_4619	0.80	-2.5
5,241,744	+		PP_4619	0.80	-1.6
5,241,744	+		PP_4619	0.80	-1.3
5,241,744	+		PP_4619	0.80	-3.4
5,241,744	+		PP_4619	0.80	-3.6
5,241,745	-		PP_4619	0.80	-1.5
5,241,745	-		PP_4619	0.80	-3.6
5,241,745	-		PP_4619	0.80	-1.1
5,241,796	-		PP_4619	0.88	-1.6
5,241,852	+				-2.8
5,241,853	-				-2.6
5,241,853	-				-2.7
5,241,855	+				-0.2
5,241,855	+				-4.3
5,241,855	+				-1.2
5,241,856	-				-2.0
5,241,856	-				-1.8
5,241,856	-				-3.7
5,241,861	+				-2.2
5,241,861	+				-1.7
5,241,861	+				-0.1
5,241,861	+				-2.1
5,241,861	+				-3.5
5,241,861	+				-1.7
5,241,862	-				-0.8
5,241,862	-				-1.9
5,241,862	-				-2.0
5,241,862	-				-3.6
5,241,862	-				-1.0
5,241,871	+				-2.7
5,241,872	-				-1.5
5,242,170	+		PP_4620	0.22	-2.5
5,242,170	+		PP_4620	0.22	-3.3
5,242,170	+		PP_4620	0.22	-3.4
5,242,171	-		PP_4620	0.22	-4.0
5,242,171	-		PP_4620	0.22	-1.6
5,242,302	+		PP_4620	0.32	-3.8
5,242,303	-		PP_4620	0.32	-3.6
5,242,303	-		PP_4620	0.32	-2.8
5,242,438	-		PP_4620	0.43	-2.8
5,242,575	+		PP_4620	0.53	-2.8
5,242,576	-		PP_4620	0.54	-3.1
5,242,707	+		PP_4620	0.64	-2.8
5,242,707	+		PP_4620	0.64	-0.3
5,242,707	+		PP_4620	0.64	-1.7
5,242,708	-		PP_4620	0.64	-1.0
5,242,708	-		PP_4620	0.64	-1.5
5,242,713	+		PP_4620	0.64	-2.1
5,242,713	+		PP_4620	0.64	-3.9
5,242,713	+		PP_4620	0.64	-1.2
5,242,714	-		PP_4620	0.64	-2.6
5,242,714	-		PP_4620	0.64	-3.3
5,242,714	-		PP_4620	0.64	-3.1
5,242,714	-		PP_4620	0.64	-2.2
5,242,783	-		PP_4620	0.70	-1.8
5,242,789	-		PP_4620	0.70	-3.5
5,242,795	-		PP_4620	0.70	-1.9