Strain Fitness in Pseudomonas putida KT2440 around PP_4573

Experiment: C.elegans, mixed culture-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4572 and PP_4573 are separated by 201 nucleotidesPP_4573 and PP_4574 are separated by 13 nucleotides PP_4572: PP_4572 - conserved exported protein of unknown function, at 5,191,546 to 5,192,619 _4572 PP_4573: PP_4573 - ATPase, AAA family, at 5,192,821 to 5,193,666 _4573 PP_4574: PP_4574 - conserved protein of unknown function, at 5,193,680 to 5,194,858 _4574 Position (kb) 5192 5193 5194Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5191.829 kb on - strand, within PP_4572at 5191.893 kb on + strand, within PP_4572at 5191.894 kb on - strand, within PP_4572at 5191.924 kb on - strand, within PP_4572at 5191.924 kb on - strand, within PP_4572at 5192.150 kb on + strand, within PP_4572at 5192.151 kb on - strand, within PP_4572at 5192.337 kb on + strand, within PP_4572at 5192.337 kb on + strand, within PP_4572at 5192.337 kb on + strand, within PP_4572at 5192.338 kb on - strand, within PP_4572at 5192.338 kb on - strand, within PP_4572at 5192.338 kb on - strand, within PP_4572at 5192.339 kb on + strand, within PP_4572at 5192.340 kb on - strand, within PP_4572at 5192.340 kb on - strand, within PP_4572at 5192.340 kb on - strand, within PP_4572at 5192.523 kb on + strandat 5192.523 kb on + strandat 5192.524 kb on - strandat 5192.524 kb on - strandat 5192.524 kb on - strandat 5192.590 kb on + strandat 5192.590 kb on + strandat 5192.590 kb on + strandat 5192.590 kb on + strandat 5192.590 kb on + strandat 5192.650 kb on + strandat 5192.686 kb on + strandat 5192.687 kb on - strandat 5192.688 kb on + strandat 5192.741 kb on - strandat 5192.760 kb on + strandat 5192.760 kb on + strandat 5192.760 kb on + strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.761 kb on - strandat 5192.763 kb on + strandat 5192.763 kb on + strandat 5192.764 kb on - strandat 5192.764 kb on - strandat 5192.764 kb on - strandat 5192.764 kb on - strandat 5193.028 kb on + strand, within PP_4573at 5193.029 kb on - strand, within PP_4573at 5193.034 kb on + strand, within PP_4573at 5193.100 kb on + strand, within PP_4573at 5193.101 kb on - strand, within PP_4573at 5193.101 kb on - strand, within PP_4573at 5193.232 kb on + strand, within PP_4573at 5193.232 kb on + strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.233 kb on - strand, within PP_4573at 5193.288 kb on + strand, within PP_4573at 5193.288 kb on + strand, within PP_4573at 5193.289 kb on - strand, within PP_4573at 5193.346 kb on + strand, within PP_4573at 5193.346 kb on + strand, within PP_4573at 5193.346 kb on + strand, within PP_4573at 5193.346 kb on + strand, within PP_4573at 5193.347 kb on - strand, within PP_4573at 5193.370 kb on - strand, within PP_4573at 5193.617 kb on + strandat 5193.617 kb on + strandat 5193.617 kb on + strandat 5193.617 kb on + strandat 5193.618 kb on - strandat 5193.618 kb on - strandat 5193.618 kb on - strandat 5193.800 kb on + strand, within PP_4574at 5193.800 kb on + strand, within PP_4574at 5193.800 kb on + strand, within PP_4574at 5193.800 kb on + strand, within PP_4574at 5193.800 kb on + strand, within PP_4574at 5193.801 kb on - strand, within PP_4574at 5193.801 kb on - strand, within PP_4574at 5193.801 kb on - strand, within PP_4574at 5193.801 kb on - strand, within PP_4574at 5193.915 kb on + strand, within PP_4574at 5194.009 kb on + strand, within PP_4574at 5194.010 kb on - strand, within PP_4574at 5194.478 kb on + strand, within PP_4574at 5194.481 kb on + strand, within PP_4574at 5194.482 kb on - strand, within PP_4574at 5194.482 kb on - strand, within PP_4574at 5194.482 kb on - strand, within PP_4574at 5194.482 kb on - strand, within PP_4574at 5194.482 kb on - strand, within PP_4574at 5194.484 kb on + strand, within PP_4574at 5194.484 kb on + strand, within PP_4574at 5194.485 kb on - strand, within PP_4574at 5194.485 kb on - strand, within PP_4574at 5194.503 kb on - strand, within PP_4574at 5194.503 kb on - strandat 5194.575 kb on - strand, within PP_4574at 5194.575 kb on - strand, within PP_4574at 5194.586 kb on + strand, within PP_4574at 5194.586 kb on + strand, within PP_4574at 5194.586 kb on + strand, within PP_4574at 5194.587 kb on - strand, within PP_4574

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
remove
5,191,829 - PP_4572 0.26 +0.1
5,191,893 + PP_4572 0.32 +1.2
5,191,894 - PP_4572 0.32 +0.7
5,191,924 - PP_4572 0.35 -0.9
5,191,924 - PP_4572 0.35 -0.7
5,192,150 + PP_4572 0.56 +0.2
5,192,151 - PP_4572 0.56 -0.2
5,192,337 + PP_4572 0.74 +1.0
5,192,337 + PP_4572 0.74 -1.0
5,192,337 + PP_4572 0.74 -0.6
5,192,338 - PP_4572 0.74 +0.1
5,192,338 - PP_4572 0.74 +1.4
5,192,338 - PP_4572 0.74 +0.2
5,192,339 + PP_4572 0.74 -2.1
5,192,340 - PP_4572 0.74 +0.3
5,192,340 - PP_4572 0.74 +0.1
5,192,340 - PP_4572 0.74 -0.6
5,192,523 + +0.1
5,192,523 + -1.6
5,192,524 - -2.0
5,192,524 - +0.6
5,192,524 - -0.4
5,192,590 + -0.5
5,192,590 + -0.1
5,192,590 + +0.3
5,192,590 + -1.0
5,192,590 + +0.2
5,192,650 + -0.9
5,192,686 + +0.0
5,192,687 - -0.2
5,192,688 + +0.2
5,192,741 - +1.0
5,192,760 + +1.2
5,192,760 + +0.6
5,192,760 + +0.1
5,192,761 - -0.8
5,192,761 - +0.4
5,192,761 - -1.0
5,192,761 - +0.2
5,192,761 - -0.5
5,192,761 - -0.4
5,192,763 + -0.4
5,192,763 + -0.2
5,192,764 - +3.1
5,192,764 - -2.7
5,192,764 - +0.8
5,192,764 - -1.5
5,193,028 + PP_4573 0.24 +1.7
5,193,029 - PP_4573 0.25 -2.4
5,193,034 + PP_4573 0.25 -1.2
5,193,100 + PP_4573 0.33 +0.0
5,193,101 - PP_4573 0.33 +0.3
5,193,101 - PP_4573 0.33 -0.8
5,193,232 + PP_4573 0.49 +0.3
5,193,232 + PP_4573 0.49 -0.2
5,193,233 - PP_4573 0.49 +0.6
5,193,233 - PP_4573 0.49 +0.1
5,193,233 - PP_4573 0.49 -1.0
5,193,233 - PP_4573 0.49 -0.0
5,193,233 - PP_4573 0.49 -2.1
5,193,233 - PP_4573 0.49 -1.9
5,193,288 + PP_4573 0.55 -1.5
5,193,288 + PP_4573 0.55 -0.0
5,193,289 - PP_4573 0.55 -1.0
5,193,346 + PP_4573 0.62 +0.7
5,193,346 + PP_4573 0.62 -0.3
5,193,346 + PP_4573 0.62 -2.6
5,193,346 + PP_4573 0.62 +0.6
5,193,347 - PP_4573 0.62 +0.1
5,193,370 - PP_4573 0.65 -1.0
5,193,617 + -1.6
5,193,617 + -0.1
5,193,617 + +0.6
5,193,617 + -0.7
5,193,618 - -0.1
5,193,618 - -0.9
5,193,618 - -1.3
5,193,800 + PP_4574 0.10 -0.3
5,193,800 + PP_4574 0.10 -1.3
5,193,800 + PP_4574 0.10 +0.2
5,193,800 + PP_4574 0.10 -0.3
5,193,800 + PP_4574 0.10 +0.6
5,193,801 - PP_4574 0.10 -1.3
5,193,801 - PP_4574 0.10 -0.5
5,193,801 - PP_4574 0.10 -1.4
5,193,801 - PP_4574 0.10 -0.6
5,193,915 + PP_4574 0.20 +0.3
5,194,009 + PP_4574 0.28 -0.1
5,194,010 - PP_4574 0.28 +1.0
5,194,478 + PP_4574 0.68 +0.5
5,194,481 + PP_4574 0.68 -0.3
5,194,482 - PP_4574 0.68 -1.3
5,194,482 - PP_4574 0.68 -0.4
5,194,482 - PP_4574 0.68 -0.5
5,194,482 - PP_4574 0.68 +0.8
5,194,482 - PP_4574 0.68 -3.1
5,194,484 + PP_4574 0.68 -1.5
5,194,484 + PP_4574 0.68 +0.2
5,194,485 - PP_4574 0.68 -0.4
5,194,485 - PP_4574 0.68 -1.2
5,194,503 - PP_4574 0.70 +0.2
5,194,503 - +0.1
5,194,575 - PP_4574 0.76 -0.8
5,194,575 - PP_4574 0.76 -0.7
5,194,586 + PP_4574 0.77 +0.0
5,194,586 + PP_4574 0.77 +0.6
5,194,586 + PP_4574 0.77 -0.8
5,194,587 - PP_4574 0.77 +0.1

Or see this region's nucleotide sequence