Strain Fitness in Pseudomonas putida KT2440 around PP_4479

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
5,088,017	+		PP_4478	0.46	-0.8
5,088,017	+		PP_4478	0.46	-0.2
5,088,019	+		PP_4478	0.46	-1.6
5,088,019	+		PP_4478	0.46	+0.3
5,088,020	-		PP_4478	0.46	-2.1
5,088,020	-		PP_4478	0.46	-2.5
5,088,020	-		PP_4478	0.46	-0.5
5,088,020	-		PP_4478	0.46	-3.3
5,088,020	-		PP_4478	0.46	-3.1
5,088,020	-		PP_4478	0.46	-2.1
5,088,020	-		PP_4478	0.46	-2.0
5,088,068	+		PP_4478	0.49	-1.3
5,088,069	-		PP_4478	0.49	-1.5
5,088,171	-		PP_4478	0.56	-2.5
5,088,269	+		PP_4478	0.63	-0.6
5,088,270	-		PP_4478	0.63	-2.1
5,088,344	+		PP_4478	0.68	-2.5
5,088,376	+		PP_4478	0.70	-1.4
5,088,376	+		PP_4478	0.70	+0.4
5,088,377	-		PP_4478	0.70	-1.7
5,088,377	-		PP_4478	0.70	-2.1
5,088,473	-		PP_4478	0.77	-1.0
5,088,473	-		PP_4478	0.77	-2.8
5,088,480	+		PP_4478	0.77	-0.1
5,088,623	+		PP_4478	0.87	-0.1
5,088,624	-		PP_4478	0.87	-0.7
5,088,624	-		PP_4478	0.87	-0.6
5,088,796	+				-0.8
5,088,797	-				-1.7
5,088,812	-				-1.8
5,089,001	+		PP_4479	0.19	+1.5
5,089,001	+		PP_4479	0.19	-0.4
5,089,005	+		PP_4479	0.19	-1.2
5,089,006	-		PP_4479	0.19	-1.6
5,089,096	+		PP_4479	0.28	+1.4
5,089,106	-		PP_4479	0.29	+0.2
5,089,106	-		PP_4479	0.29	-0.4
5,089,106	-		PP_4479	0.29	+0.3
5,089,204	+		PP_4479	0.38	+1.4
5,089,205	-		PP_4479	0.38	+1.2
5,089,205	-		PP_4479	0.38	+1.4
5,089,582	+		PP_4479	0.75	-0.9
5,089,666	+		PP_4479	0.83	+0.2
5,089,667	-		PP_4479	0.83	+0.9
5,089,667	-		PP_4479	0.83	+1.0
5,089,821	+				+0.2
5,089,841	+				-0.2
5,089,841	+				+1.5
5,089,841	+				+0.2
5,089,841	+				-2.7
5,089,842	-				-1.4
5,089,842	-				+1.1
5,089,842	-				-1.4
5,089,842	-				-2.0
5,089,842	-				-1.2
5,089,882	+				-0.8
5,090,188	+		PP_4480	0.27	-1.5
5,090,188	+		PP_4480	0.27	-1.1
5,090,188	+		PP_4480	0.27	-0.4
5,090,188	+		PP_4480	0.27	-2.9
5,090,188	+		PP_4480	0.27	-1.9
5,090,188	+		PP_4480	0.27	-2.4
5,090,189	-		PP_4480	0.27	-0.5
5,090,220	+		PP_4480	0.30	-2.6
5,090,220	+		PP_4480	0.30	-0.8
5,090,220	+		PP_4480	0.30	-0.4
5,090,221	-		PP_4480	0.30	-2.4
5,090,221	-		PP_4480	0.30	-0.4
5,090,221	-		PP_4480	0.30	+0.6
5,090,221	-		PP_4480	0.30	-2.3
5,090,250	+		PP_4480	0.33	-0.8
5,090,250	+		PP_4480	0.33	-1.7
5,090,250	+		PP_4480	0.33	-3.3
5,090,251	-		PP_4480	0.33	-2.6
5,090,251	-		PP_4480	0.33	-1.5
5,090,251	-		PP_4480	0.33	-1.7
5,090,296	+		PP_4480	0.37	-2.1
5,090,296	+		PP_4480	0.37	-1.0
5,090,296	+		PP_4480	0.37	-0.4
5,090,297	-		PP_4480	0.37	-2.1
5,090,297	-		PP_4480	0.37	-3.2
5,090,297	-		PP_4480	0.37	-3.3
5,090,297	-		PP_4480	0.37	-3.4
5,090,297	-		PP_4480	0.37	-4.6
5,090,297	-		PP_4480	0.37	-2.0
5,090,333	+		PP_4480	0.41	-0.8
5,090,334	-		PP_4480	0.41	-1.8
5,090,371	+		PP_4480	0.45	-2.6
5,090,372	-		PP_4480	0.45	-2.9
5,090,372	-		PP_4480	0.45	-0.8
5,090,372	-				-0.1
5,090,557	+		PP_4480	0.63	-0.6
5,090,557	+		PP_4480	0.63	-1.5
5,090,557	+		PP_4480	0.63	+1.1
5,090,558	-		PP_4480	0.63	-0.1
5,090,625	+		PP_4480	0.69	+0.2
5,090,626	-		PP_4480	0.70	-1.8
5,090,675	-		PP_4480	0.74	-0.1