Strain Fitness in Pseudomonas putida KT2440 around PP_4030

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
4,539,394	+				-0.4
4,539,395	-				+0.1
4,539,455	+				+0.9
4,539,455	+				+0.3
4,539,456	-				-0.0
4,539,456	-				+0.7
4,539,474	+				-0.8
4,539,501	-				-1.0
4,539,501	-				+0.4
4,539,501	-				-0.2
4,539,501	-				+1.3
4,539,501	-				-1.8
4,539,680	+		PP_4029	0.27	-0.0
4,539,782	+		PP_4029	0.39	-0.4
4,539,899	+		PP_4029	0.54	-0.8
4,539,899	+		PP_4029	0.54	-1.1
4,539,899	+		PP_4029	0.54	-1.8
4,539,899	+		PP_4029	0.54	-1.4
4,539,899	+		PP_4029	0.54	-0.5
4,539,899	+		PP_4029	0.54	+0.4
4,539,899	+		PP_4029	0.54	+0.5
4,539,900	-		PP_4029	0.54	+0.9
4,539,900	-		PP_4029	0.54	-0.8
4,539,900	-		PP_4029	0.54	-1.0
4,539,900	-		PP_4029	0.54	-0.3
4,540,007	+		PP_4029	0.67	-0.8
4,540,007	+		PP_4029	0.67	+0.8
4,540,008	-		PP_4029	0.67	-1.8
4,540,008	-		PP_4029	0.67	-1.5
4,540,008	-		PP_4029	0.67	-0.1
4,540,162	+		PP_4029	0.85	+0.1
4,540,258	+				+0.2
4,540,259	-				-1.6
4,540,418	+		PP_4030	0.12	-0.5
4,540,418	+		PP_4030	0.12	-0.1
4,540,419	-		PP_4030	0.12	+1.3
4,540,454	+		PP_4030	0.16	+0.7
4,540,455	-		PP_4030	0.16	+0.7
4,540,455	-		PP_4030	0.16	+0.6
4,540,556	+		PP_4030	0.28	-1.0
4,540,556	+		PP_4030	0.28	+1.4
4,540,557	-		PP_4030	0.28	+0.7
4,540,557	-		PP_4030	0.28	-0.2
4,540,557	-		PP_4030	0.28	+0.6
4,540,614	+		PP_4030	0.35	-1.0
4,540,785	-		PP_4030	0.55	+1.0
4,541,123	+				+0.2
4,541,124	-				+0.9
4,541,194	+				+0.6
4,541,194	+				+0.2
4,541,194	+				+0.3
4,541,194	+				+1.0
4,541,194	+				-0.9
4,541,194	+				+0.6
4,541,194	+				+1.2
4,541,194	+				+1.2
4,541,195	-				+0.2
4,541,195	-				-0.1
4,541,195	-				+2.2
4,541,195	-				+0.4
4,541,195	-				+0.5
4,541,195	-				-0.6
4,541,195	-				+0.1
4,541,237	+				-0.9
4,541,237	+				-0.8
4,541,237	+				+0.6
4,541,237	+				-1.1
4,541,237	+				+1.4
4,541,238	-				+1.2
4,541,238	-				+0.6
4,541,238	-				+0.9
4,541,238	-				-1.7
4,541,238	-				+0.0
4,541,238	-				+0.2
4,541,240	-				-0.2
4,541,267	+				+0.5
4,541,269	+				+0.3
4,541,269	+				+1.9
4,541,269	+				+1.8
4,541,270	-				-0.6
4,541,270	-				-0.2
4,541,275	+				-0.5
4,541,275	+				+1.2
4,541,275	+				-0.3
4,541,275	+				-0.3
4,541,275	+				+0.6
4,541,275	+				-0.2
4,541,275	+				-1.3
4,541,276	-				+0.2
4,541,276	-				-0.2
4,541,276	-				-0.6
4,541,276	-				+0.6
4,541,279	+				+0.4
4,541,279	+				+1.3
4,541,279	+				+0.5
4,541,279	+				-2.1
4,541,279	+				+0.6
4,541,279	+				-0.7
4,541,279	+				+0.2
4,541,279	+				+0.9
4,541,279	+				+0.5
4,541,279	+				+0.2
4,541,279	+				-0.2
4,541,280	-				-0.9
4,541,280	-				+0.2
4,541,280	-				-1.4
4,541,280	-				+0.4
4,541,280	-				+0.5
4,541,280	-				+0.1
4,541,280	-				+0.4
4,541,280	-				+1.4
4,541,280	-				-0.3
4,541,280	-				+1.3
4,541,280	-				+0.9
4,541,280	-				+1.0
4,541,280	-				-0.4
4,541,280	-				-1.3
4,541,283	+				-1.5
4,541,284	-				-0.7
4,541,284	-				+0.2
4,541,284	-				-0.5
4,541,284	-				+0.4
4,541,284	-				+0.8
4,541,284	-				+0.5
4,541,344	+				+0.6
4,541,542	+		PP_4031	0.17	-0.2
4,541,542	+		PP_4031	0.17	+0.3
4,541,543	-		PP_4031	0.17	-0.3
4,541,543	-		PP_4031	0.17	+0.1
4,541,579	+		PP_4031	0.20	+0.5
4,541,771	-		PP_4031	0.32	+0.7
4,541,771	-		PP_4031	0.32	+1.2
4,541,779	+		PP_4031	0.33	-0.2
4,541,779	+		PP_4031	0.33	-1.4
4,541,780	-		PP_4031	0.33	-0.4
4,541,780	-		PP_4031	0.33	-1.1
4,541,780	-		PP_4031	0.33	-2.4
4,541,893	-		PP_4031	0.41	+0.2