Strain Fitness in Pseudomonas putida KT2440 around PP_4008

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
4,516,256	+		PP_4006	0.17	-2.0
4,516,392	+		PP_4006	0.36	-1.1
4,516,403	-		PP_4006	0.38	-1.9
4,516,403	-		PP_4006	0.38	-1.3
4,516,451	+		PP_4006	0.44	-1.9
4,516,451	+		PP_4006	0.44	-2.3
4,516,452	-		PP_4006	0.45	-2.0
4,516,473	-		PP_4006	0.48	-3.4
4,516,473	-		PP_4006	0.48	-1.2
4,516,473	-		PP_4006	0.48	-3.5
4,516,475	-		PP_4006	0.48	-2.4
4,516,475	-		PP_4006	0.48	-4.1
4,516,505	+		PP_4006	0.52	-1.5
4,516,505	+		PP_4006	0.52	-1.3
4,516,505	+		PP_4006	0.52	-1.9
4,516,505	+		PP_4006	0.52	-3.3
4,516,505	+		PP_4006	0.52	-2.3
4,516,506	-		PP_4006	0.52	-1.6
4,516,506	-		PP_4006	0.52	-2.7
4,516,506	-		PP_4006	0.52	-2.4
4,516,506	-		PP_4006	0.52	-1.5
4,516,542	+		PP_4006	0.57	-2.2
4,516,568	+		PP_4006	0.61	-2.9
4,516,643	+		PP_4006	0.72	-0.5
4,516,643	+		PP_4006	0.72	-1.2
4,516,644	-		PP_4006	0.72	-2.9
4,516,652	+		PP_4006	0.73	-1.4
4,516,652	+		PP_4006	0.73	-0.0
4,516,781	+				-3.1
4,516,781	+				-1.6
4,516,781	+				-0.4
4,516,782	-				-2.9
4,516,782	-				-3.4
4,516,782	-				-1.4
4,516,782	-				-3.8
4,516,815	+				-1.3
4,516,875	+				-0.4
4,517,425	-				-1.4
4,517,650	+		PP_4008	0.18	+0.5
4,517,650	+		PP_4008	0.18	-2.5
4,517,651	-		PP_4008	0.18	-1.6
4,517,716	+		PP_4008	0.21	-1.5
4,517,828	+		PP_4008	0.25	-2.3
4,517,829	-		PP_4008	0.26	-2.8
4,517,829	-		PP_4008	0.26	-1.5
4,517,829	-		PP_4008	0.26	-3.2
4,517,889	+		PP_4008	0.28	-1.5
4,517,937	+		PP_4008	0.30	-1.0
4,517,938	-		PP_4008	0.30	-2.5
4,518,230	+		PP_4008	0.43	-3.4
4,518,230	+		PP_4008	0.43	-3.0
4,518,230	+		PP_4008	0.43	-2.5
4,518,231	-		PP_4008	0.43	-0.1
4,518,285	+		PP_4008	0.46	-3.7
4,518,390	+		PP_4008	0.50	-2.3
4,518,390	+		PP_4008	0.50	-1.9
4,518,391	-		PP_4008	0.50	-2.1
4,518,771	+		PP_4008	0.67	-2.5
4,518,771	+		PP_4008	0.67	-2.0
4,518,771	+		PP_4008	0.67	-3.6
4,518,771	+		PP_4008	0.67	-2.6
4,518,772	-		PP_4008	0.67	-2.8
4,518,941	+		PP_4008	0.75	-2.3
4,518,942	-		PP_4008	0.75	-2.0
4,518,993	+		PP_4008	0.77	-2.0
4,519,110	+		PP_4008	0.82	-1.3
4,519,110	+		PP_4008	0.82	-3.1
4,519,110	+		PP_4008	0.82	-3.5
4,519,111	-		PP_4008	0.82	-2.8
4,519,111	-		PP_4008	0.82	-2.2
4,519,515	-				-0.7
4,519,519	+				-3.0
4,519,519	+				-2.3
4,519,519	+				-3.1
4,519,519	+				-2.1
4,519,519	+				-2.3
4,519,519	+				-1.1
4,519,519	+				-1.1
4,519,519	+				-2.8
4,519,520	-				-2.5
4,519,520	-				-3.2
4,519,520	-				-3.0
4,519,520	-				-3.2
4,519,532	+				-2.8
4,519,533	-				-0.8
4,519,533	-				-1.7
4,519,578	-				-1.0
4,519,645	+		PP_4009	0.26	-2.5
4,519,765	-		PP_4009	0.59	-4.0
4,519,765	-		PP_4009	0.59	-1.3
4,519,791	+		PP_4009	0.66	-2.7
4,519,791	+		PP_4009	0.66	-1.9
4,519,792	-		PP_4009	0.67	-1.3
4,519,792	-		PP_4009	0.67	-0.8
4,519,900	+				-1.7
4,519,900	+				-1.7
4,519,901	-				+0.4
4,520,016	+				-2.1
4,520,017	-				+0.5
4,520,025	+				-0.8
4,520,026	-				+1.1
4,520,026	-				+1.9
4,520,105	+				+1.2
4,520,105	+				+0.2
4,520,105	+				-0.9
4,520,105	+				+1.8
4,520,106	-				+0.9
4,520,138	+				+1.3
4,520,139	-				+2.0
4,520,139	-				+1.8
4,520,139	-				+1.2
4,520,185	+		PP_4010	0.16	+1.7
4,520,208	+		PP_4010	0.24	+0.6
4,520,233	+		PP_4010	0.34	+1.2
4,520,258	-		PP_4010	0.43	+1.6
4,520,258	-		PP_4010	0.43	+1.2
4,520,289	-		PP_4010	0.55	+1.8
4,520,289	-		PP_4010	0.55	+0.9
4,520,454	-				+0.5
4,520,482	+				-0.1
4,520,482	+				+1.9
4,520,482	+				+0.4
4,520,482	+				+0.1
4,520,483	-				+1.2
4,520,483	-				-1.2
4,520,483	-				-0.4
4,520,483	-				-0.1
4,520,483	-				-0.1