Strain Fitness in Pseudomonas putida KT2440 around PP_3731

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
4,256,932	-				+0.3
4,256,932	-				+1.3
4,257,325	-				-1.7
4,257,366	+		PP_3730	0.65	+0.3
4,257,533	+				+1.8
4,257,534	-		PP_3730	0.88	+0.8
4,257,558	+				-0.5
4,257,559	-				+0.2
4,257,559	-				-0.8
4,257,651	+				+0.9
4,257,652	-				+1.3
4,257,652	-				+1.9
4,257,652	-				+1.9
4,257,652	-				+1.7
4,257,672	+				+0.6
4,257,673	-				+1.9
4,257,673	-				+1.4
4,257,906	+		PP_3731	0.33	+2.1
4,257,929	-		PP_3731	0.37	+2.2
4,257,938	-		PP_3731	0.38	+2.2
4,258,141	+		PP_3731	0.69	+2.1
4,258,141	+		PP_3731	0.69	+2.6
4,258,141	+		PP_3731	0.69	+2.5
4,258,141	+		PP_3731	0.69	+2.1
4,258,141	+		PP_3731	0.69	+2.5
4,258,141	+		PP_3731	0.69	+1.0
4,258,141	+		PP_3731	0.69	+1.8
4,258,141	+		PP_3731	0.69	+2.3
4,258,141	+		PP_3731	0.69	+2.2
4,258,141	+		PP_3731	0.69	+2.1
4,258,142	-		PP_3731	0.70	+2.5
4,258,142	-		PP_3731	0.70	+2.6
4,258,142	-		PP_3731	0.70	+2.7
4,258,142	-		PP_3731	0.70	+2.9
4,258,142	-		PP_3731	0.70	+2.9
4,258,142	-		PP_3731	0.70	+2.4
4,258,142	-		PP_3731	0.70	+2.1
4,258,142	-		PP_3731	0.70	+2.1
4,258,174	+		PP_3731	0.75	+1.7
4,258,318	+				+3.1
4,258,375	+				+0.8
4,258,398	-				-0.3
4,258,404	+				+0.7
4,258,405	-				+0.1
4,258,405	-				+0.8
4,258,547	+		PP_3732	0.12	-0.3
4,258,547	+		PP_3732	0.12	-0.1
4,258,547	+		PP_3732	0.12	+0.8
4,258,548	-		PP_3732	0.13	+0.3
4,258,548	-		PP_3732	0.13	-0.7
4,258,548	-		PP_3732	0.13	+0.1
4,258,548	-		PP_3732	0.13	-0.8
4,258,548	-		PP_3732	0.13	+0.6
4,259,065	+		PP_3732	0.82	+0.0
4,259,219	+				+0.3
4,259,219	+				-1.4
4,259,219	+				-2.3
4,259,255	+				-0.7
4,259,255	+				-0.2
4,259,255	+				+1.8
4,259,255	+				-0.1
4,259,256	-				+1.0
4,259,258	+				-1.5
4,259,277	-				+0.7