Strain Fitness in Pseudomonas putida KT2440 around PP_3725

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
4,249,237	-		PP_3724	0.63	+0.7
4,249,488	+		PP_3724	0.75	+0.1
4,249,488	+		PP_3724	0.75	+0.0
4,249,528	-		PP_3724	0.76	+0.5
4,249,528	-		PP_3724	0.76	+0.4
4,249,735	-		PP_3724	0.86	+1.7
4,249,735	-		PP_3724	0.86	+0.9
4,249,735	-		PP_3724	0.86	-0.4
4,249,735	-		PP_3724	0.86	-0.5
4,250,083	-				+2.6
4,250,083	-				+2.9
4,250,364	-		PP_3725	0.28	+2.2
4,250,567	+		PP_3725	0.45	-0.2
4,250,567	+		PP_3725	0.45	-2.0
4,250,567	+		PP_3725	0.45	+0.9
4,250,576	+		PP_3725	0.46	-3.2
4,250,577	-				+0.3
4,250,684	+		PP_3725	0.55	-0.6
4,250,684	+		PP_3725	0.55	-0.6
4,250,684	+		PP_3725	0.55	+0.2
4,250,685	-		PP_3725	0.55	+0.7
4,250,685	-		PP_3725	0.55	+0.9
4,250,685	-		PP_3725	0.55	-0.5
4,250,685	-		PP_3725	0.55	+0.5
4,250,685	-				+1.3
4,250,879	+		PP_3725	0.72	+0.3
4,250,879	+		PP_3725	0.72	-0.1
4,250,996	+		PP_3725	0.82	-0.0
4,250,996	+		PP_3725	0.82	+0.3
4,250,997	-		PP_3725	0.82	-1.1
4,251,041	+		PP_3725	0.86	-0.1
4,251,041	+		PP_3725	0.86	-0.2
4,251,041	+		PP_3725	0.86	+0.1
4,251,041	+		PP_3725	0.86	-1.3
4,251,042	-		PP_3725	0.86	-0.7
4,251,239	+				+0.8
4,251,379	+		PP_3726	0.18	+0.2
4,251,783	-		PP_3726	0.69	-2.8
4,252,119	+				-1.0
4,252,119	+				+0.3
4,252,120	-				+2.0
4,252,150	-				+2.2
4,252,150	-				+1.9
4,252,178	-				+1.3
4,252,178	-				+2.0
4,252,203	+				+0.5