Strain Fitness in Pseudomonas putida KT2440 around PP_3721

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
4,242,883	+				+0.3
4,242,911	-				+0.8
4,242,972	+				-0.4
4,242,973	-				+0.5
4,242,973	-				+0.5
4,243,018	-				+0.4
4,243,161	-		PP_3720	0.19	-2.0
4,243,161	-		PP_3720	0.19	-0.4
4,243,208	+		PP_3720	0.25	-0.4
4,243,209	-		PP_3720	0.25	-0.7
4,243,209	-		PP_3720	0.25	-0.3
4,243,209	-		PP_3720	0.25	+0.5
4,243,209	-		PP_3720	0.25	-0.4
4,243,209	-		PP_3720	0.25	-0.1
4,243,209	-		PP_3720	0.25	+0.1
4,243,346	+		PP_3720	0.45	+0.1
4,243,364	+		PP_3720	0.47	-0.0
4,243,365	-		PP_3720	0.47	-1.3
4,243,541	+		PP_3720	0.72	-0.9
4,243,542	-		PP_3720	0.72	-0.7
4,243,550	+		PP_3720	0.73	-0.5
4,243,551	-		PP_3720	0.74	-2.9
4,243,572	+		PP_3720	0.77	+0.7
4,243,613	+		PP_3720	0.82	+0.8
4,243,613	+		PP_3720	0.82	-0.1
4,243,613	+		PP_3720	0.82	+0.3
4,243,613	+		PP_3720	0.82	-0.8
4,243,613	+		PP_3720	0.82	+0.7
4,243,614	-		PP_3720	0.82	-1.1
4,243,614	-		PP_3720	0.82	+0.4
4,243,614	-		PP_3720	0.82	-1.2
4,243,614	-		PP_3720	0.82	-0.1
4,243,724	-				-0.0
4,243,724	-				-0.5
4,243,759	-				-0.4
4,243,759	-				-0.5
4,243,813	+				-0.9
4,243,814	-				-1.9
4,243,814	-				-2.6
4,243,999	+		PP_3721	0.14	-3.0
4,243,999	+		PP_3721	0.14	-0.7
4,244,386	+		PP_3721	0.47	+0.1
4,244,387	-		PP_3721	0.47	-1.9
4,244,402	-		PP_3721	0.48	-1.1
4,244,635	+		PP_3721	0.68	-0.8
4,244,636	-		PP_3721	0.68	-1.6
4,244,644	+		PP_3721	0.68	-1.3
4,244,644	+		PP_3721	0.68	-1.1
4,244,644	+		PP_3721	0.68	-0.9
4,244,644	+				+2.3
4,244,644	+		PP_3721	0.68	-0.4
4,244,644	+		PP_3721	0.68	-0.7
4,244,645	-		PP_3721	0.68	-0.8
4,244,645	-		PP_3721	0.68	-0.2
4,244,645	-		PP_3721	0.68	-1.5
4,244,645	-		PP_3721	0.68	-0.6
4,244,685	+		PP_3721	0.72	-2.6
4,244,686	-		PP_3721	0.72	-1.0
4,244,705	-		PP_3721	0.73	+0.1
4,244,705	-		PP_3721	0.73	+0.2
4,244,705	-		PP_3721	0.73	-0.7
4,244,817	+		PP_3721	0.83	-1.4
4,244,828	-		PP_3721	0.84	-1.3
4,244,873	+		PP_3721	0.88	-2.1
4,245,057	+				-1.4
4,245,057	+				-1.7
4,245,057	+				-2.0
4,245,058	-				+3.4
4,245,058	-				+0.8
4,245,082	-				+2.8
4,245,305	-		PP_3722	0.21	+2.8
4,245,326	+		PP_3722	0.23	-0.5
4,245,326	+		PP_3722	0.23	-0.6
4,245,326	+		PP_3722	0.23	+0.1
4,245,327	-		PP_3722	0.23	+3.0
4,245,327	-		PP_3722	0.23	+1.9
4,245,327	-		PP_3722	0.23	+2.9
4,245,373	+		PP_3722	0.27	-2.5
4,245,397	+		PP_3722	0.29	-0.8
4,245,445	+		PP_3722	0.33	-1.9
4,245,495	+		PP_3722	0.37	-2.1
4,245,496	-		PP_3722	0.37	+2.9
4,245,633	+		PP_3722	0.48	+1.5
4,245,633	+		PP_3722	0.48	+0.6
4,245,633	+		PP_3722	0.48	-1.7
4,245,633	+		PP_3722	0.48	+0.9
4,245,633	+		PP_3722	0.48	-0.5
4,245,633	+		PP_3722	0.48	+0.4
4,245,634	-		PP_3722	0.48	+1.3
4,245,634	-		PP_3722	0.48	+1.8
4,245,634	-		PP_3722	0.48	+2.3
4,245,872	-		PP_3722	0.67	+1.5
4,246,017	+		PP_3722	0.79	-1.0
4,246,018	-		PP_3722	0.79	+1.3