Strain Fitness in Pseudomonas putida KT2440 around PP_3596

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
4,084,448	+		PP_3594	0.82	+0.1
4,084,448	+		PP_3594	0.82	-0.8
4,084,492	+		PP_3594	0.88	-1.4
4,084,532	-				-0.3
4,084,770	+		PP_3595	0.27	-1.1
4,084,771	-		PP_3595	0.28	-0.1
4,084,776	+		PP_3595	0.28	-1.7
4,084,776	+		PP_3595	0.28	-1.0
4,084,777	-		PP_3595	0.28	-0.8
4,084,777	-		PP_3595	0.28	-0.6
4,084,821	+		PP_3595	0.35	-0.2
4,084,821	+		PP_3595	0.35	-0.7
4,084,822	-		PP_3595	0.35	-0.6
4,084,824	+		PP_3595	0.35	-0.3
4,084,825	-				+0.7
4,084,825	-		PP_3595	0.35	-0.0
4,084,932	+		PP_3595	0.50	-0.8
4,085,038	+		PP_3595	0.65	+0.6
4,085,038	+		PP_3595	0.65	-1.6
4,085,133	+		PP_3595	0.78	+0.5
4,085,134	-		PP_3595	0.79	-1.5
4,085,190	+		PP_3595	0.86	-0.3
4,085,190	+		PP_3595	0.86	-0.2
4,085,211	+		PP_3595	0.89	-0.1
4,085,211	+		PP_3595	0.89	-0.1
4,085,384	+				-0.5
4,085,467	+		PP_3596	0.13	-1.9
4,085,533	+		PP_3596	0.19	-2.2
4,085,533	+		PP_3596	0.19	-1.9
4,085,533	+		PP_3596	0.19	-2.0
4,085,533	+		PP_3596	0.19	-0.9
4,085,534	-		PP_3596	0.19	-0.3
4,085,625	+		PP_3596	0.26	-2.9
4,085,626	-		PP_3596	0.26	-1.8
4,086,130	+		PP_3596	0.67	-2.0
4,086,131	-		PP_3596	0.67	-0.6
4,086,131	-		PP_3596	0.67	-1.2
4,086,187	+		PP_3596	0.71	-3.3
4,086,188	-		PP_3596	0.71	-1.6
4,086,191	+		PP_3596	0.71	-1.7
4,086,191	+				-0.3
4,086,191	+		PP_3596	0.71	-3.1
4,086,191	+		PP_3596	0.71	-0.7
4,086,191	+		PP_3596	0.71	-1.7
4,086,192	-		PP_3596	0.71	-0.5
4,086,656	+		PP_3597	0.11	-0.5
4,086,657	-		PP_3597	0.11	+0.2
4,086,657	-		PP_3597	0.11	-1.3
4,086,804	+		PP_3597	0.30	-0.1
4,086,850	-		PP_3597	0.36	+1.4
4,086,850	-		PP_3597	0.36	-1.3
4,087,023	-		PP_3597	0.58	-0.3
4,087,461	-				+0.1
4,087,461	-				-1.2
4,087,470	+				+1.0
4,087,474	+				-1.5
4,087,475	-				-1.1
4,087,511	+				-0.2
4,087,516	-				+0.1