Strain Fitness in Pseudomonas putida KT2440 around PP_3242

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,676,009	-				+0.8
3,676,113	-		PP_5592	0.11	+0.2
3,676,181	-		PP_5592	0.38	-0.7
3,676,248	+		PP_5592	0.65	-0.1
3,676,249	-		PP_5592	0.65	-0.0
3,676,249	-		PP_5592	0.65	+0.1
3,676,271	+		PP_5592	0.74	-1.5
3,676,272	-		PP_5592	0.74	+0.5
3,676,303	+		PP_5592	0.87	+0.5
3,676,307	+		PP_5592	0.88	-1.8
3,676,308	-		PP_5592	0.88	+0.0
3,676,308	-		PP_5592	0.88	+0.6
3,676,308	-		PP_5592	0.88	+0.6
3,676,308	-		PP_5592	0.88	-1.1
3,676,308	-		PP_5592	0.88	+1.1
3,676,330	+				+0.3
3,676,330	+				+0.2
3,676,330	+				+0.6
3,676,330	+				+0.4
3,676,330	+				-0.7
3,676,511	+		PP_3241	0.33	+0.6
3,676,839	+				-1.8
3,676,839	+				-0.8
3,676,840	-				+0.7
3,676,840	-				+1.8
3,676,858	+				-1.6
3,676,959	-				-0.6
3,676,959	-				+0.5
3,676,959	-				+1.4
3,676,959	-				+1.0
3,676,960	+				-0.8
3,676,961	-				-1.1
3,677,080	+				+0.4
3,677,080	+				-1.0
3,677,117	-				+1.5
3,677,117	-				+1.1
3,677,160	+		PP_3242	0.10	+0.9
3,677,161	-		PP_3242	0.10	+0.5
3,677,163	-		PP_3242	0.11	+1.3
3,677,247	-		PP_3242	0.16	+1.1
3,677,427	-		PP_3242	0.27	+1.5
3,677,427	-		PP_3242	0.27	+1.0
3,677,443	-		PP_3242	0.28	+0.7
3,677,443	-		PP_3242	0.28	+1.6
3,677,479	+		PP_3242	0.31	-0.9
3,677,479	+		PP_3242	0.31	-0.9
3,677,479	+		PP_3242	0.31	-1.2
3,677,479	+		PP_3242	0.31	-1.4
3,677,479	+		PP_3242	0.31	-0.8
3,677,479	+		PP_3242	0.31	-0.8
3,677,480	-		PP_3242	0.31	-1.4
3,677,483	+		PP_3242	0.31	-0.9
3,677,484	-		PP_3242	0.31	+0.0
3,677,575	+		PP_3242	0.37	+0.5
3,677,576	-		PP_3242	0.37	+0.3
3,677,613	+				+0.0
3,677,614	-		PP_3242	0.39	+1.2
3,677,711	-		PP_3242	0.45	+0.9
3,677,711	-		PP_3242	0.45	-0.0
3,677,757	+		PP_3242	0.48	-0.1
3,677,757	+		PP_3242	0.48	-2.0
3,677,758	-		PP_3242	0.48	+2.1
3,677,814	+		PP_3242	0.52	+0.2
3,677,814	+		PP_3242	0.52	-0.6
3,677,814	+		PP_3242	0.52	-0.8
3,678,056	+		PP_3242	0.67	-1.3
3,678,056	+		PP_3242	0.67	-1.5
3,678,057	-		PP_3242	0.67	+0.9
3,678,057	-		PP_3242	0.67	+0.2
3,678,057	-		PP_3242	0.67	-1.1
3,678,057	-		PP_3242	0.67	+0.3
3,678,163	-		PP_3242	0.74	+1.3
3,678,312	-		PP_3242	0.84	+0.2
3,678,349	+		PP_3242	0.86	-1.5
3,678,350	-		PP_3242	0.86	+1.0
3,678,458	+				-0.1
3,678,736	+		PP_3243	0.25	-0.6
3,678,789	+		PP_3243	0.35	-1.8
3,678,959	+		PP_3243	0.69	-2.7
3,678,959	+		PP_3243	0.69	+0.3
3,679,103	+				-2.5
3,679,138	-				-2.2
3,679,163	+				-3.0
3,679,164	-				-2.8
3,679,184	+				-2.0
3,679,184	+				-1.6
3,679,184	+				-2.5
3,679,184	+				-3.6
3,679,185	-				-1.4
3,679,185	-				-1.2
3,679,254	-		PP_3244	0.17	-4.0
3,679,254	-		PP_3244	0.17	-4.5
3,679,254	-		PP_3244	0.17	-2.3