Strain Fitness in Pseudomonas putida KT2440 around PP_2952

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,355,089	-		PP_2950	0.74	-0.7
3,355,089	-		PP_2950	0.74	-0.3
3,355,089	-		PP_2950	0.74	-0.5
3,355,090	+		PP_2950	0.74	+0.4
3,355,090	+		PP_2950	0.74	+0.5
3,355,252	+				-1.0
3,355,252	+				-0.3
3,355,253	-				-0.6
3,355,440	-		PP_2951	0.31	+0.7
3,355,529	-		PP_2951	0.47	-0.6
3,355,529	-		PP_2951	0.47	+0.1
3,355,653	-		PP_2951	0.68	+0.0
3,355,653	-		PP_2951	0.68	+0.8
3,355,653	-		PP_2951	0.68	+0.4
3,355,655	-		PP_2951	0.69	-0.2
3,355,683	-		PP_2951	0.74	-0.2
3,355,693	+		PP_2951	0.75	-0.9
3,355,783	-				-0.3
3,355,787	-				-1.8
3,355,838	-				+1.0
3,355,845	+				-0.4
3,355,846	-				+0.4
3,356,011	+				-0.5
3,356,141	+				-0.2
3,356,141	+		PP_2952	0.21	+0.4
3,356,141	+		PP_2952	0.21	-0.2
3,356,141	+		PP_2952	0.21	-0.4
3,356,141	+		PP_2952	0.21	-0.1
3,356,333	+		PP_2952	0.42	-0.3
3,356,386	+		PP_2952	0.48	-0.0
3,356,386	+		PP_2952	0.48	-0.9
3,356,386	+		PP_2952	0.48	+0.0
3,356,386	+		PP_2952	0.48	-0.6
3,356,387	-		PP_2952	0.48	+0.6
3,356,387	-		PP_2952	0.48	-0.8
3,356,387	-		PP_2952	0.48	+1.0
3,356,388	+		PP_2952	0.48	-0.3
3,356,388	+		PP_2952	0.48	-0.9
3,356,388	+		PP_2952	0.48	-0.2
3,356,388	+		PP_2952	0.48	-1.2
3,356,388	+		PP_2952	0.48	+1.1
3,356,388	+				+1.1
3,356,388	+		PP_2952	0.48	-0.0
3,356,388	+		PP_2952	0.48	+0.4
3,356,389	-		PP_2952	0.48	-0.3
3,356,390	+		PP_2952	0.49	-0.1
3,356,390	+		PP_2952	0.49	+0.3
3,356,390	+		PP_2952	0.49	+0.2
3,356,390	+		PP_2952	0.49	-1.7
3,356,390	+		PP_2952	0.49	+0.2
3,356,390	+		PP_2952	0.49	-0.6
3,356,390	+		PP_2952	0.49	-0.8
3,356,390	+		PP_2952	0.49	-0.6
3,356,391	-		PP_2952	0.49	+1.8
3,356,391	-		PP_2952	0.49	+0.5
3,356,391	-		PP_2952	0.49	+1.2
3,356,391	-		PP_2952	0.49	+0.8
3,356,391	-		PP_2952	0.49	+2.0
3,356,391	-				+2.2
3,356,391	-		PP_2952	0.49	+1.4
3,356,391	-		PP_2952	0.49	+0.6
3,356,391	-		PP_2952	0.49	+1.5
3,356,391	-		PP_2952	0.49	+0.9
3,356,391	-		PP_2952	0.49	+1.8
3,356,427	+		PP_2952	0.53	+1.5
3,356,427	+		PP_2952	0.53	+0.9
3,356,428	-		PP_2952	0.53	+2.2
3,356,428	-		PP_2952	0.53	+1.2
3,356,432	-		PP_2952	0.53	+0.9
3,356,432	-		PP_2952	0.53	+1.4
3,356,654	+		PP_2952	0.78	+0.1
3,356,654	+		PP_2952	0.78	-0.0
3,356,655	-		PP_2952	0.78	+0.6
3,356,655	-		PP_2952	0.78	-0.2
3,356,762	-				+0.8
3,356,791	-				+0.0
3,356,848	+				-0.2
3,356,952	+				-1.3
3,356,989	-				+1.5
3,356,989	-				+0.9
3,357,089	+		PP_2953	0.13	-1.0
3,357,211	+		PP_2953	0.26	-1.0
3,357,211	+		PP_2953	0.26	-1.0
3,357,212	-		PP_2953	0.26	+1.5
3,357,212	-		PP_2953	0.26	-0.4
3,357,212	-		PP_2953	0.26	-0.6
3,357,212	-		PP_2953	0.26	+0.7
3,357,212	-		PP_2953	0.26	+0.2
3,357,214	+		PP_2953	0.26	-0.0
3,357,244	+		PP_2953	0.29	-0.2
3,357,245	-		PP_2953	0.29	-1.0
3,357,254	-		PP_2953	0.30	+0.6
3,357,254	-		PP_2953	0.30	-0.1
3,357,294	+		PP_2953	0.34	+0.5
3,357,624	+		PP_2953	0.67	-0.6
3,357,772	+		PP_2953	0.81	-2.0