Strain Fitness in Pseudomonas putida KT2440 around PP_2867

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,267,385	-				-1.1
3,267,385	-				-0.6
3,267,720	+		PP_2866	0.31	+1.2
3,267,720	+		PP_2866	0.31	-0.1
3,267,721	-		PP_2866	0.31	-0.2
3,267,815	+		PP_2866	0.47	-0.2
3,267,815	+		PP_2866	0.47	+0.0
3,267,815	+		PP_2866	0.47	-1.2
3,267,816	-		PP_2866	0.47	+0.2
3,267,888	-		PP_2866	0.58	+0.2
3,268,064	+		PP_2866	0.87	-0.4
3,268,065	-		PP_2866	0.87	+0.7
3,268,201	+				+0.2
3,268,274	+				+0.4
3,268,364	+		PP_2867	0.13	-0.5
3,268,365	-		PP_2867	0.13	+0.6
3,268,403	+		PP_2867	0.16	-0.0
3,268,404	-		PP_2867	0.16	+1.1
3,268,418	+		PP_2867	0.17	-0.5
3,268,538	+		PP_2867	0.27	-0.2
3,268,538	+		PP_2867	0.27	-0.3
3,268,538	+		PP_2867	0.27	-0.1
3,268,559	+		PP_2867	0.29	-0.5
3,268,742	-		PP_2867	0.44	-0.3
3,268,742	-		PP_2867	0.44	-0.3
3,268,742	-		PP_2867	0.44	+0.5
3,268,849	+		PP_2867	0.53	+1.0
3,268,849	+		PP_2867	0.53	-0.2
3,268,855	+		PP_2867	0.54	-0.2
3,268,882	+		PP_2867	0.56	-0.2
3,268,929	+		PP_2867	0.60	+0.2
3,269,111	+		PP_2867	0.75	-0.8
3,269,247	+				-1.1
3,269,248	-		PP_2867	0.86	+0.3
3,269,248	-		PP_2867	0.86	-0.0
3,269,248	-		PP_2867	0.86	+0.8
3,269,452	+				-0.3
3,269,453	-				-1.3
3,269,453	-				-1.5
3,269,472	-				-1.3
3,269,472	-				+0.2
3,269,472	-				-0.7
3,269,680	+		PP_2868	0.31	+0.5
3,269,680	+		PP_2868	0.31	-0.2
3,269,680	+		PP_2868	0.31	-0.5
3,269,681	-		PP_2868	0.31	-0.8
3,269,695	+		PP_2868	0.34	-0.6
3,269,695	+		PP_2868	0.34	+1.2
3,269,695	+		PP_2868	0.34	+0.8
3,269,782	+		PP_2868	0.48	+0.3
3,269,782	+		PP_2868	0.48	+0.1
3,269,782	+		PP_2868	0.48	-0.3
3,269,818	+		PP_2868	0.54	-1.3
3,269,818	+		PP_2868	0.54	+1.1
3,269,819	-		PP_2868	0.54	+0.5
3,269,819	-		PP_2868	0.54	+0.5
3,269,819	-		PP_2868	0.54	-1.7
3,269,951	-		PP_2868	0.76	-2.1
3,270,121	+				-0.3
3,270,121	+				-0.3
3,270,121	+				+0.6
3,270,121	+				+1.1
3,270,121	+				+0.7
3,270,121	+				+0.1
3,270,122	-				+0.2
3,270,122	-				-0.2
3,270,125	+				-0.5
3,270,125	+				-0.6
3,270,213	+				-1.0
3,270,214	-				-0.2
3,270,214	-				+0.5