Strain Fitness in Pseudomonas putida KT2440 around PP_2702

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
3,091,957	+				-0.0
3,092,032	-				-0.3
3,092,079	-				-0.9
3,092,079	-				+0.3
3,092,088	-				-0.4
3,092,121	-				-1.0
3,092,121	-				-0.4
3,092,121	-				-0.5
3,092,121	-				+0.1
3,092,167	+		PP_2701	0.14	-0.4
3,092,174	+		PP_2701	0.14	+0.6
3,092,174	+		PP_2701	0.14	+1.3
3,092,255	-		PP_2701	0.23	+0.8
3,092,263	+		PP_2701	0.24	+0.1
3,092,264	-		PP_2701	0.24	+0.4
3,092,369	+		PP_2701	0.35	+1.1
3,092,478	-		PP_2701	0.47	-0.6
3,092,601	+		PP_2701	0.60	-0.3
3,092,790	-		PP_2701	0.80	-0.5
3,092,790	-		PP_2701	0.80	-0.5
3,092,793	+		PP_2701	0.80	-1.1
3,092,794	-		PP_2701	0.80	+0.4
3,092,965	+				-0.0
3,092,966	-				-0.4
3,092,969	-				-1.7
3,092,969	-				+0.2
3,092,969	-				+1.1
3,092,969	-				+0.1
3,092,969	-				+0.2
3,092,976	+				-1.2
3,093,028	+				-1.1
3,093,028	+				-1.4
3,093,077	-		PP_2702	0.11	-0.2
3,093,220	+		PP_2702	0.23	-0.2
3,093,220	+		PP_2702	0.23	+0.7
3,093,221	-		PP_2702	0.24	+1.0
3,093,385	+		PP_2702	0.38	-0.3
3,093,385	+		PP_2702	0.38	-0.8
3,093,386	-		PP_2702	0.38	-2.1
3,093,386	-		PP_2702	0.38	-2.1
3,093,386	-		PP_2702	0.38	-0.7
3,093,530	-		PP_2702	0.51	-0.3
3,093,562	+		PP_2702	0.54	-0.7
3,093,598	+		PP_2702	0.57	-0.7
3,093,598	+		PP_2702	0.57	-2.0
3,093,598	+		PP_2702	0.57	-0.9
3,093,616	+		PP_2702	0.58	-0.9
3,093,616	+		PP_2702	0.58	-0.1
3,093,616	+		PP_2702	0.58	+0.2
3,093,616	+		PP_2702	0.58	-1.3
3,093,616	+		PP_2702	0.58	-0.2
3,093,617	-		PP_2702	0.59	-1.2
3,093,662	-		PP_2702	0.63	-0.7
3,093,662	-		PP_2702	0.63	-0.0
3,093,833	-		PP_2702	0.78	-0.4
3,093,904	+		PP_2702	0.84	+0.5
3,093,905	-		PP_2702	0.84	-1.1
3,093,905	-		PP_2702	0.84	+0.5
3,093,931	+		PP_2702	0.86	+0.2
3,093,971	-		PP_2702	0.90	-1.3
3,093,971	-		PP_2702	0.90	-0.5
3,094,070	+				+1.5
3,094,071	-				+0.4
3,094,158	+				-0.8
3,094,158	+				-0.6
3,094,381	-				+0.2
3,094,399	+				-0.9
3,094,422	-				+0.5
3,094,576	+				-1.1
3,094,577	-				+0.4
3,094,591	+		PP_2703	0.10	-0.3
3,094,607	+		PP_2703	0.11	-0.5
3,094,607	+		PP_2703	0.11	+0.1
3,094,910	+		PP_2703	0.35	-1.9
3,094,911	-		PP_2703	0.35	-0.2
3,094,981	+		PP_2703	0.40	-1.0