Strain Fitness in Pseudomonas putida KT2440 around PP_2565

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
2,925,957	-		PP_2564	0.20	+0.4
2,926,179	+		PP_2564	0.52	+0.5
2,926,179	+				-1.2
2,926,180	-		PP_2564	0.52	+0.6
2,926,185	+		PP_2564	0.53	-0.5
2,926,186	-		PP_2564	0.53	-0.2
2,926,192	-		PP_2564	0.54	-0.9
2,926,316	+		PP_2564	0.71	-0.6
2,926,317	-		PP_2564	0.72	-0.8
2,926,317	-		PP_2564	0.72	-0.2
2,926,317	-		PP_2564	0.72	+0.5
2,926,317	-		PP_2564	0.72	-0.6
2,926,317	-		PP_2564	0.72	+0.5
2,926,317	-		PP_2564	0.72	+0.0
2,926,317	-		PP_2564	0.72	-0.1
2,926,317	-		PP_2564	0.72	+0.1
2,926,427	+		PP_2564	0.87	+0.1
2,926,428	-		PP_2564	0.87	-0.2
2,926,428	-				+0.4
2,926,428	-		PP_2564	0.87	+0.5
2,926,428	-		PP_2564	0.87	+0.5
2,926,633	-				-1.3
2,927,159	+		PP_2565	0.17	-0.3
2,927,160	-		PP_2565	0.17	-1.0
2,927,233	-		PP_2565	0.20	-0.7
2,927,545	-		PP_2565	0.33	-0.5
2,927,545	-		PP_2565	0.33	-1.1
2,927,545	-		PP_2565	0.33	-1.6
2,927,545	-		PP_2565	0.33	-0.5
2,927,973	+		PP_2565	0.50	-0.6
2,927,973	+		PP_2565	0.50	+1.2
2,927,974	-		PP_2565	0.50	+0.1
2,927,974	-		PP_2565	0.50	-0.5
2,928,040	-		PP_2565	0.53	+0.1
2,928,168	-		PP_2565	0.58	+1.2
2,928,202	-		PP_2565	0.59	-0.1
2,928,255	+		PP_2565	0.62	-1.4
2,928,255	+		PP_2565	0.62	-1.8
2,928,307	+		PP_2565	0.64	-0.5
2,928,308	-		PP_2565	0.64	+0.3
2,928,308	-		PP_2565	0.64	-2.0
2,928,498	+		PP_2565	0.71	-0.1
2,928,525	+		PP_2565	0.72	-0.4
2,928,526	-		PP_2565	0.72	-0.5
2,928,763	-		PP_2565	0.82	-1.4
2,928,898	-		PP_2565	0.88	-1.7
2,928,972	+				+0.6
2,928,986	-				+0.1
2,928,986	-				-1.0
2,928,986	-				-0.5
2,929,068	+				-0.9
2,929,069	-				-0.7
2,929,069	-				-0.2
2,929,090	+				-0.4
2,929,339	-				-0.4
2,929,444	+				+1.3
2,929,444	+				+1.1
2,929,444	+				-0.5
2,929,445	-				+0.3
2,929,445	-				-0.0
2,929,445	-				-0.3
2,929,445	-				+1.5
2,929,447	+				-1.5
2,929,447	+				+0.2
2,929,448	-				-1.2
2,929,448	-				-0.7
2,929,448	-				+0.9
2,929,448	-				-0.5
2,929,453	+				+0.1
2,929,453	+				+0.2
2,929,454	-				-0.4
2,929,454	-				-0.7
2,929,642	+				+0.7
2,929,710	+		PP_2566	0.10	+0.7
2,929,888	+		PP_2566	0.14	+0.5
2,929,888	+		PP_2566	0.14	-0.6
2,929,911	+		PP_2566	0.14	+0.1
2,929,911	+		PP_2566	0.14	+0.9
2,929,911	+		PP_2566	0.14	-1.1
2,929,912	-		PP_2566	0.14	+0.4
2,929,965	+		PP_2566	0.15	-0.2
2,929,966	-		PP_2566	0.15	+0.1
2,929,966	-		PP_2566	0.15	+0.2
2,929,966	-		PP_2566	0.15	-0.2
2,930,152	-		PP_2566	0.19	-0.4