Strain Fitness in Pseudomonas putida KT2440 around PP_2395

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
2,736,699	+		PP_2394	0.81	-0.2
2,736,699	+		PP_2394	0.81	-1.4
2,736,993	-		PP_2394	0.88	-0.7
2,737,102	+				+0.4
2,737,102	+				+0.5
2,737,204	+				-0.7
2,737,205	-				+0.3
2,737,205	-				-0.8
2,737,205	-				+0.6
2,737,295	-				-0.8
2,737,295	-				-2.4
2,737,324	+				-0.2
2,737,500	+				+0.1
2,737,554	+				-2.6
2,737,554	+				-0.2
2,737,555	-				-1.2
2,737,555	-				-0.2
2,737,558	+				+0.3
2,737,558	+				-0.2
2,737,558	+				-0.9
2,737,558	+				-1.0
2,737,558	+				-0.9
2,737,558	+				-0.6
2,737,559	-				+0.2
2,737,559	-				+1.0
2,737,559	-				+0.4
2,737,559	-				+0.6
2,737,559	-				+0.5
2,737,559	-				-0.7
2,737,559	-				+1.1
2,737,559	-				+1.0
2,737,560	+				+0.1
2,737,560	+				+0.2
2,737,561	-				+0.3
2,737,562	+				-0.5
2,737,562	+				-0.2
2,737,562	+				+0.1
2,737,562	+				+0.1
2,737,562	+				-0.4
2,737,563	-				-0.3
2,737,563	-				-1.1
2,737,588	+				-0.6
2,737,588	+				-0.3
2,737,588	+				+0.2
2,737,860	-				-1.7
2,737,880	+				+0.3
2,737,962	-				+0.7
2,738,202	+		PP_2395	0.13	-0.5
2,738,202	+		PP_2395	0.13	-0.2
2,738,203	-		PP_2395	0.13	+0.5
2,738,217	-		PP_2395	0.13	-0.6
2,738,237	+		PP_2395	0.14	-0.3
2,738,237	+		PP_2395	0.14	+1.5
2,738,445	-		PP_2395	0.18	-2.0
2,738,537	+		PP_2395	0.20	+0.5
2,738,537	+		PP_2395	0.20	-0.8
2,738,538	-		PP_2395	0.20	+0.2
2,738,701	+		PP_2395	0.24	+0.7
2,738,701	+		PP_2395	0.24	-0.7
2,738,701	+		PP_2395	0.24	+0.3
2,738,702	-		PP_2395	0.24	+1.0
2,738,702	-		PP_2395	0.24	+0.2
2,739,155	-		PP_2395	0.34	-0.4
2,739,155	-		PP_2395	0.34	-1.4
2,739,204	-		PP_2395	0.35	-1.1
2,739,278	-		PP_2395	0.37	-2.9
2,739,335	+		PP_2395	0.38	-0.6
2,739,336	-		PP_2395	0.38	+0.3
2,739,447	+		PP_2395	0.41	+0.1
2,739,448	-				-0.1
2,739,559	+				-0.2
2,739,559	+		PP_2395	0.43	-0.7
2,739,560	-		PP_2395	0.43	+0.4
2,739,760	-		PP_2395	0.48	+0.4
2,739,885	-		PP_2395	0.50	-1.5
2,739,892	+		PP_2395	0.51	-2.1
2,739,892	+		PP_2395	0.51	-0.5
2,739,892	+		PP_2395	0.51	-1.5
2,739,945	+		PP_2395	0.52	-0.6
2,739,946	-		PP_2395	0.52	+0.8
2,739,946	-		PP_2395	0.52	-0.1
2,739,981	-		PP_2395	0.52	-0.9
2,740,136	+		PP_2395	0.56	+0.1
2,740,200	+		PP_2395	0.57	-1.3
2,740,304	-		PP_2395	0.60	+0.9
2,740,311	-		PP_2395	0.60	-1.7
2,740,462	-		PP_2395	0.63	+0.5
2,740,462	-		PP_2395	0.63	+1.3
2,740,462	-		PP_2395	0.63	+0.3
2,740,462	-		PP_2395	0.63	-1.8
2,740,510	+		PP_2395	0.64	-0.9
2,740,510	+		PP_2395	0.64	+0.4
2,740,758	+		PP_2395	0.70	+1.7
2,740,758	+		PP_2395	0.70	-1.1
2,740,759	-		PP_2395	0.70	-0.1
2,740,759	-		PP_2395	0.70	+0.7
2,740,839	+		PP_2395	0.72	-2.0
2,740,840	-		PP_2395	0.72	-0.5
2,741,084	-		PP_2395	0.77	-1.8
2,741,114	+		PP_2395	0.78	-1.4
2,741,268	+		PP_2395	0.81	-0.7
2,741,537	-		PP_2395	0.87	+0.2
2,741,537	-		PP_2395	0.87	+0.6
2,741,607	+		PP_2395	0.89	-1.4
2,741,607	+		PP_2395	0.89	-2.3
2,741,607	+		PP_2395	0.89	-0.5
2,741,643	+		PP_2395	0.89	-0.9
2,741,643	+		PP_2395	0.89	-2.8
2,741,643	+		PP_2395	0.89	-1.0
2,741,644	-		PP_2395	0.89	-1.2
2,741,644	-		PP_2395	0.89	+0.6
2,741,670	+				-0.9
2,741,671	-				+0.3
2,742,059	-				+0.1
2,742,059	-				+0.4
2,742,108	+				-2.8
2,742,108	+				-0.9
2,742,108	+				-0.5
2,742,109	-				-0.1
2,742,109	-				+0.7
2,742,109	-				+1.2
2,742,109	-				+0.7
2,742,109	-				+0.9
2,742,130	-				+0.4
2,742,166	+				-2.0
2,742,166	+				-1.3
2,742,167	-				-1.0
2,742,167	-				+1.9
2,742,205	+				-3.2
2,742,206	-				+0.2
2,742,240	+				-2.7
2,742,246	+				-3.0
2,742,339	+				-1.6
2,742,339	+				+0.1
2,742,339	+				+0.2
2,742,339	+				-0.2
2,742,339	+				+0.1
2,742,340	-				-1.1
2,742,340	-				-1.1
2,742,340	-				-1.6
2,742,340	-				+0.0
2,742,340	-				-0.1
2,742,424	-		PP_2396	0.19	-0.2
2,742,560	+		PP_2396	0.42	+0.8
2,742,661	+		PP_2396	0.60	+1.4
2,742,662	-		PP_2396	0.60	+0.9
2,742,662	-		PP_2396	0.60	-0.3
2,742,808	-		PP_2396	0.85	+1.6
2,742,946	+				+0.6
2,742,947	-				-2.8
2,742,947	-				+0.7
2,742,957	-				-0.9
2,742,957	-				+0.6
2,742,977	+		PP_2397	0.11	+0.8
2,742,977	+		PP_2397	0.11	+0.1
2,742,977	+		PP_2397	0.11	+0.4
2,742,978	-		PP_2397	0.11	-0.8
2,743,008	-		PP_2397	0.16	-0.1
2,743,008	-		PP_2397	0.16	+0.5
2,743,033	+		PP_2397	0.19	-0.1
2,743,034	-		PP_2397	0.20	+0.9