Strain Fitness in Pseudomonas putida KT2440 around PP_2216

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
2,526,041	+		PP_2215	0.24	-2.5
2,526,135	+		PP_2215	0.32	-1.6
2,526,246	-		PP_2215	0.41	-0.9
2,526,538	+		PP_2215	0.65	-1.7
2,526,539	-		PP_2215	0.65	-1.2
2,526,539	-		PP_2215	0.65	-1.3
2,526,836	+				-2.6
2,526,836	+				-3.7
2,526,945	+				+0.3
2,526,946	-				+1.1
2,526,967	-				-0.1
2,526,967	-				-1.6
2,526,967	-				+0.5
2,527,148	+		PP_2216	0.17	+0.1
2,527,148	+		PP_2216	0.17	+0.6
2,527,148	+		PP_2216	0.17	-0.3
2,527,157	+		PP_2216	0.18	+0.4
2,527,157	+		PP_2216	0.18	+1.1
2,527,158	-		PP_2216	0.18	+0.2
2,527,169	+		PP_2216	0.19	+0.0
2,527,394	+		PP_2216	0.39	-0.9
2,527,394	+		PP_2216	0.39	+0.7
2,527,394	+		PP_2216	0.39	-0.3
2,527,395	-		PP_2216	0.39	+0.9
2,527,395	-		PP_2216	0.39	-0.8
2,527,395	-		PP_2216	0.39	-0.0
2,527,423	+		PP_2216	0.41	+1.7
2,527,536	+		PP_2216	0.51	+0.4
2,527,537	-		PP_2216	0.51	+0.3
2,527,647	-		PP_2216	0.61	-0.2
2,527,743	-		PP_2216	0.70	-0.1
2,527,743	-		PP_2216	0.70	+0.2
2,527,848	+		PP_2216	0.79	-0.8
2,527,848	+		PP_2216	0.79	+0.2
2,527,849	-		PP_2216	0.79	-0.1
2,527,849	-		PP_2216	0.79	+0.2
2,528,009	+				-0.9
2,528,334	+		PP_2217	0.30	-2.3
2,528,334	+		PP_2217	0.30	-1.4
2,528,382	-		PP_2217	0.36	-1.7
2,528,453	+		PP_2217	0.46	-2.4
2,528,454	-		PP_2217	0.46	-3.3
2,528,931	-				+0.9