Strain Fitness in Pseudomonas putida KT2440 around PP_1763

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,966,312	+				-0.8
1,966,313	-				-0.6
1,966,365	+				-1.3
1,966,466	-		PP_1762	0.15	+0.6
1,966,466	-		PP_1762	0.15	-0.9
1,966,514	-		PP_1762	0.22	-1.4
1,966,555	+		PP_1762	0.27	-0.3
1,966,556	-		PP_1762	0.27	-2.2
1,966,556	-		PP_1762	0.27	+0.4
1,966,556	-		PP_1762	0.27	-0.6
1,966,556	-		PP_1762	0.27	+0.2
1,966,585	+		PP_1762	0.31	+0.5
1,966,663	+		PP_1762	0.40	-0.3
1,966,663	+		PP_1762	0.40	-0.5
1,966,664	-		PP_1762	0.41	+1.1
1,966,810	+		PP_1762	0.59	-0.8
1,966,810	+		PP_1762	0.59	-0.9
1,966,811	-		PP_1762	0.59	+0.3
1,966,867	+		PP_1762	0.66	+0.1
1,966,868	-		PP_1762	0.67	+0.3
1,966,868	-		PP_1762	0.67	+0.2
1,966,868	-		PP_1762	0.67	-0.7
1,966,868	-		PP_1762	0.67	-0.2
1,966,868	-		PP_1762	0.67	+0.6
1,966,868	-		PP_1762	0.67	+0.4
1,966,868	-		PP_1762	0.67	-1.1
1,966,933	+		PP_1762	0.75	-0.2
1,966,934	-		PP_1762	0.75	-0.1
1,966,934	-		PP_1762	0.75	-1.4
1,966,974	+		PP_1762	0.80	-0.4
1,966,975	-		PP_1762	0.80	+1.6
1,966,975	-		PP_1762	0.80	-0.4
1,967,041	+		PP_1762	0.89	-0.1
1,967,042	-		PP_1762	0.89	+0.4
1,967,104	-				+0.8
1,967,250	+				-0.1
1,967,304	+				-2.3
1,967,305	-				+0.3
1,967,310	+				-0.8
1,967,310	+				+0.3
1,967,311	-				-1.5
1,967,311	-				-2.4
1,967,311	-				-3.0
1,967,493	+		PP_1763	0.33	-1.3
1,967,493	+		PP_1763	0.33	-2.8
1,967,494	-		PP_1763	0.33	-1.6
1,967,506	-		PP_1763	0.35	-0.7
1,967,506	-		PP_1763	0.35	-2.7
1,967,506	-		PP_1763	0.35	-2.4
1,967,506	-		PP_1763	0.35	-2.0
1,967,708	+		PP_1763	0.62	-2.5
1,967,708	+				+1.3
1,967,829	+		PP_1763	0.78	-1.9
1,968,113	+				+0.0
1,968,248	+		PP_1764	0.15	+1.7
1,968,248	+		PP_1764	0.15	-1.7
1,968,248	+		PP_1764	0.15	-1.0
1,968,248	+		PP_1764	0.15	-1.8
1,968,248	+		PP_1764	0.15	-1.0
1,968,248	+		PP_1764	0.15	-2.0
1,968,249	-		PP_1764	0.15	-2.5
1,968,250	+		PP_1764	0.15	-1.9
1,968,250	+		PP_1764	0.15	-2.1
1,968,257	-		PP_1764	0.16	-3.2
1,968,801	+				-1.9
1,968,802	-				-2.7
1,968,822	+				-2.4
1,968,822	+				-2.1
1,968,822	+				-1.0
1,968,822	+				+1.2
1,968,822	+				-3.0
1,968,822	+				-0.6
1,968,823	-				-2.5
1,968,823	-				-2.7