Strain Fitness in Pseudomonas putida KT2440 around PP_1661

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,855,889	+		PP_1659	0.67	+0.4
1,855,890	-		PP_1659	0.67	-0.8
1,856,060	+		PP_1659	0.80	-0.1
1,856,060	+		PP_1659	0.80	+0.6
1,856,061	-		PP_1659	0.80	-0.6
1,856,061	-		PP_1659	0.80	+0.6
1,856,133	+		PP_1659	0.85	-0.0
1,856,134	-		PP_1659	0.85	-1.5
1,856,138	-		PP_1659	0.86	-1.0
1,856,181	-		PP_1659	0.89	+0.4
1,856,181	-		PP_1659	0.89	+0.6
1,856,181	-		PP_1659	0.89	+0.4
1,856,181	-		PP_1659	0.89	-0.4
1,856,181	-		PP_1659	0.89	+0.3
1,856,502	+		PP_1660	0.39	-2.4
1,856,632	-		PP_1660	0.63	+0.4
1,856,632	-		PP_1660	0.63	-0.5
1,856,661	-		PP_1660	0.69	-0.2
1,856,661	-		PP_1660	0.69	+0.2
1,856,685	+		PP_1660	0.73	-0.7
1,856,685	+		PP_1660	0.73	-0.1
1,856,686	-		PP_1660	0.74	+1.5
1,856,686	-		PP_1660	0.74	+0.4
1,856,686	-		PP_1660	0.74	-0.5
1,856,734	-		PP_1660	0.83	-0.4
1,856,832	+				+0.6
1,856,832	+				-0.6
1,856,832	+				-0.7
1,856,833	-				-0.9
1,856,833	-				-0.3
1,856,903	+				+0.6
1,856,993	+				+0.3
1,857,137	+		PP_1661	0.14	+0.6
1,857,137	+		PP_1661	0.14	-0.6
1,857,138	-		PP_1661	0.14	+0.5
1,857,176	+		PP_1661	0.16	-0.8
1,857,177	-		PP_1661	0.16	+0.5
1,857,263	+		PP_1661	0.20	-0.9
1,857,264	-		PP_1661	0.20	+1.1
1,857,294	-		PP_1661	0.21	+0.1
1,857,368	+		PP_1661	0.24	-1.6
1,857,368	+		PP_1661	0.24	-1.0
1,857,368	+		PP_1661	0.24	-1.2
1,857,368	+		PP_1661	0.24	+0.5
1,857,396	-		PP_1661	0.25	+0.9
1,857,401	+		PP_1661	0.26	-0.3
1,857,401	+		PP_1661	0.26	-1.9
1,857,402	-		PP_1661	0.26	+0.2
1,857,470	+		PP_1661	0.29	-0.0
1,857,629	+		PP_1661	0.36	+0.0
1,857,686	+		PP_1661	0.38	-0.0
1,857,686	+		PP_1661	0.38	-0.0
1,857,800	+		PP_1661	0.43	-0.1
1,857,801	-		PP_1661	0.43	+1.1
1,857,989	-		PP_1661	0.52	-1.0
1,858,094	+		PP_1661	0.56	+0.2
1,858,094	+		PP_1661	0.56	+0.3
1,858,095	-		PP_1661	0.56	+0.2
1,858,095	-		PP_1661	0.56	-2.6
1,858,095	-		PP_1661	0.56	-0.7
1,858,153	+		PP_1661	0.59	-1.0
1,858,255	+		PP_1661	0.63	+2.2
1,858,328	+		PP_1661	0.67	-1.8
1,858,329	-		PP_1661	0.67	+0.1
1,858,329	-		PP_1661	0.67	-1.9
1,858,344	-		PP_1661	0.67	-2.1
1,858,381	+		PP_1661	0.69	-0.4
1,858,381	+		PP_1661	0.69	-0.8
1,858,385	+		PP_1661	0.69	-0.6
1,858,385	+		PP_1661	0.69	+0.6
1,858,385	+		PP_1661	0.69	-0.4
1,858,386	-		PP_1661	0.69	-0.5
1,858,386	-		PP_1661	0.69	+0.3
1,858,436	-		PP_1661	0.71	-1.6
1,858,484	+		PP_1661	0.74	-1.0
1,858,521	-		PP_1661	0.75	-0.8
1,858,868	+				-1.6
1,859,078	+				-1.5
1,859,078	+				-0.9
1,859,078	+				+0.9
1,859,078	+				-3.6
1,859,079	-				-0.1
1,859,079	-				+1.0
1,859,250	-		PP_1662	0.30	-1.4
1,859,281	+		PP_1662	0.44	-0.4
1,859,281	+		PP_1662	0.44	-0.5
1,859,282	-		PP_1662	0.44	+0.1
1,859,282	-		PP_1662	0.44	-1.7
1,859,349	+		PP_1662	0.74	+0.5
1,859,418	-				+0.5
1,859,419	+				+0.2
1,859,441	+				-0.4
1,859,546	-				-0.2
1,859,546	-				+0.1
1,859,619	+				-1.6
1,859,619	+				-0.7
1,859,619	+				-1.8
1,859,620	-				-0.2
1,859,620	-				-0.1
1,859,664	+		PP_1663	0.14	-2.8
1,859,665	-		PP_1663	0.14	-1.2
1,859,665	-		PP_1663	0.14	-1.7
1,859,799	+		PP_1663	0.33	-0.5
1,859,800	-		PP_1663	0.33	-1.6
1,859,832	+		PP_1663	0.38	-2.4
1,859,832	+		PP_1663	0.38	-0.5
1,859,833	-		PP_1663	0.38	-2.3
1,859,833	-		PP_1663	0.38	+0.1
1,859,833	-		PP_1663	0.38	-1.0
1,859,833	-		PP_1663	0.38	-2.7
1,859,833	-		PP_1663	0.38	-0.2
1,859,883	+		PP_1663	0.45	-1.5
1,860,024	+		PP_1663	0.65	-1.0
1,860,024	+		PP_1663	0.65	-1.9
1,860,025	-		PP_1663	0.65	+0.0