Strain Fitness in Pseudomonas putida KT2440 around PP_1408

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,606,047	-		PP_1407	0.88	+0.1
1,606,060	+		PP_1407	0.89	+0.1
1,606,075	-		PP_1407	0.90	+0.2
1,606,087	+				+0.1
1,606,087	+				+0.1
1,606,088	-				+0.0
1,606,097	-				-0.7
1,606,097	-				-0.7
1,606,097	-				+1.2
1,606,126	+				+0.1
1,606,267	+				-0.6
1,606,291	-				-0.4
1,606,291	-				+0.1
1,606,356	+				-2.6
1,606,357	-				-0.9
1,606,492	+		PP_t64	0.42	+0.1
1,606,493	-		PP_t64	0.43	+0.6
1,606,526	+		PP_t64	0.88	+0.7
1,606,526	+				+1.6
1,606,526	+		PP_t64	0.88	-1.6
1,606,527	-				-0.1
1,606,527	-				-0.4
1,606,528	+				-1.4
1,606,529	-				+0.8
1,606,585	+				+0.2
1,606,588	-				-1.0
1,606,628	+				+0.5
1,606,629	-				-0.9
1,606,687	-				+1.5
1,606,861	-		PP_1408	0.24	-1.1
1,606,903	+		PP_1408	0.29	-1.6
1,606,977	+		PP_1408	0.37	-2.3
1,607,010	+		PP_1408	0.41	-2.1
1,607,011	-				+1.2
1,607,011	-		PP_1408	0.41	-0.5
1,607,011	-		PP_1408	0.41	-2.5
1,607,100	+		PP_1408	0.51	-1.7
1,607,100	+		PP_1408	0.51	-2.2
1,607,100	+		PP_1408	0.51	-1.4
1,607,100	+		PP_1408	0.51	-3.9
1,607,122	-		PP_1408	0.54	-2.1
1,607,181	+		PP_1408	0.60	-1.4
1,607,282	-		PP_1408	0.72	-1.5
1,607,282	-		PP_1408	0.72	-1.4
1,607,346	+		PP_1408	0.79	-2.2
1,607,346	+		PP_1408	0.79	-2.0
1,607,346	+				+0.0
1,607,347	-		PP_1408	0.79	-0.9
1,607,389	+		PP_1408	0.84	-1.6
1,607,393	+		PP_1408	0.84	-3.1
1,607,393	+		PP_1408	0.84	-3.1
1,607,394	-		PP_1408	0.84	-0.8
1,607,472	+				-0.3
1,607,485	-				-1.4
1,607,514	-				-1.3
1,607,514	-				-1.6
1,607,573	+				-1.7
1,607,573	+				-0.2
1,607,590	-				-2.8
1,607,590	-				-0.7
1,607,598	+				-0.3
1,607,661	-				-0.7
1,607,700	+				-0.9
1,607,700	+				+0.1
1,607,701	-				-0.5
1,607,701	-				-0.5
1,607,751	+				-1.4
1,607,751	+				-2.6
1,607,821	+				-0.4
1,607,821	+				-0.2
1,607,822	-				-3.7
1,607,850	-				-0.1
1,607,850	-				-2.7
1,607,850	-				-1.2
1,607,878	+				-2.1
1,607,889	+				-1.4
1,607,889	+				-1.6
1,608,022	+		PP_1409	0.21	-0.6
1,608,023	+		PP_1409	0.21	-1.3
1,608,113	-		PP_1409	0.34	-2.8
1,608,139	+		PP_1409	0.38	-1.1
1,608,139	+		PP_1409	0.38	+0.2
1,608,139	+		PP_1409	0.38	+0.3
1,608,140	-		PP_1409	0.38	-0.2
1,608,140	-		PP_1409	0.38	-1.2
1,608,140	-		PP_1409	0.38	-0.8
1,608,140	-		PP_1409	0.38	-0.8
1,608,176	-		PP_1409	0.43	-1.5
1,608,279	+		PP_1409	0.58	-0.3
1,608,280	-		PP_1409	0.58	-2.5
1,608,373	+		PP_1409	0.72	+0.2
1,608,374	-		PP_1409	0.72	-3.2
1,608,374	-		PP_1409	0.72	-0.5
1,608,374	-		PP_1409	0.72	-1.6
1,608,374	-		PP_1409	0.72	+0.4
1,608,429	+		PP_1409	0.80	+0.0
1,608,430	-		PP_1409	0.80	-1.8
1,608,471	+		PP_1409	0.86	-1.0
1,608,532	+				-0.4
1,608,532	+				-0.0
1,608,533	-				+0.3
1,608,533	-				-0.4
1,608,533	-				+0.1
1,608,533	-				+0.3