Strain Fitness in Pseudomonas putida KT2440 around PP_0879

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
1,018,086	+				+1.2
1,018,087	-				+0.2
1,018,094	-				+0.5
1,018,094	-				+0.7
1,018,112	-				+0.3
1,018,133	+				+0.6
1,018,134	-				+0.7
1,018,183	+				-1.0
1,018,251	-		PP_0878	0.16	+1.5
1,018,315	+		PP_0878	0.23	+0.7
1,018,316	-		PP_0878	0.23	+0.7
1,018,316	-		PP_0878	0.23	+0.9
1,018,316	-		PP_0878	0.23	+1.5
1,018,316	-		PP_0878	0.23	+1.0
1,018,336	+		PP_0878	0.25	+1.1
1,018,336	+		PP_0878	0.25	+0.8
1,018,336	+		PP_0878	0.25	+1.6
1,018,337	-		PP_0878	0.25	-1.0
1,018,379	-		PP_0878	0.30	+0.0
1,018,379	-		PP_0878	0.30	+0.3
1,018,390	-		PP_0878	0.31	+1.4
1,018,390	-		PP_0878	0.31	+0.3
1,018,442	-		PP_0878	0.36	+0.6
1,018,621	+		PP_0878	0.55	+1.8
1,018,622	-		PP_0878	0.55	+0.4
1,019,021	-				+2.2
1,019,153	+				+0.6
1,019,154	-				+1.0
1,019,157	+		PP_0879	0.10	+1.2
1,019,157	+		PP_0879	0.10	+1.2
1,019,286	+		PP_0879	0.23	+1.4
1,019,349	+		PP_0879	0.30	+1.8
1,019,349	+		PP_0879	0.30	-0.1
1,019,349	+		PP_0879	0.30	+1.9
1,019,350	-		PP_0879	0.30	+0.7
1,019,350	-		PP_0879	0.30	+1.0
1,019,708	+		PP_0879	0.67	+1.6
1,019,716	-		PP_0879	0.68	+2.3
1,019,809	+		PP_0879	0.77	+1.1
1,019,809	+		PP_0879	0.77	+0.7
1,019,810	-		PP_0879	0.77	+2.2
1,019,810	-		PP_0879	0.77	+0.3
1,019,810	-		PP_0879	0.77	+1.7
1,019,963	+				+1.6
1,019,963	+				+1.4
1,020,141	+		PP_0880	0.11	+1.5
1,020,141	+		PP_0880	0.11	+1.0
1,020,141	+		PP_0880	0.11	+0.7
1,020,142	-		PP_0880	0.11	+0.8
1,020,166	+		PP_0880	0.14	+1.0
1,020,421	+		PP_0880	0.41	+1.4
1,020,421	+		PP_0880	0.41	+1.5
1,020,905	-				+1.6
1,020,905	-				+0.1
1,020,960	-				+0.5
1,020,960	-				+1.0
1,021,013	+				-0.0