Strain Fitness in Pseudomonas putida KT2440 around PP_0832

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
968,120	+		PP_0831	0.23	+0.3
968,121	-		PP_0831	0.23	-0.9
968,270	-		PP_0831	0.49	-0.4
968,288	+		PP_0831	0.52	-1.0
968,389	+		PP_0831	0.69	+1.7
968,389	+		PP_0831	0.69	+0.3
968,389	+		PP_0831	0.69	+0.3
968,389	+		PP_0831	0.69	-0.4
968,436	+		PP_0831	0.77	+0.3
968,436	+		PP_0831	0.77	-0.1
968,436	+		PP_0831	0.77	+1.0
968,437	-		PP_0831	0.77	+1.1
968,581	+				+0.8
968,582	-				+1.4
968,599	+				+0.9
968,599	+				+0.4
968,600	-				-3.3
968,764	+				+0.8
968,791	-				+1.5
968,791	-				+0.6
968,802	-				+0.8
968,802	-				-0.2
968,876	+				-0.2
968,877	-				-1.6
968,877	-				-0.4
969,055	-				-2.8
969,232	+		PP_0832	0.14	-1.7
969,232	+		PP_0832	0.14	-1.5
969,233	-		PP_0832	0.14	-1.5
969,395	+		PP_0832	0.29	-1.8
969,396	-		PP_0832	0.29	-1.4
969,529	+		PP_0832	0.42	-0.0
969,529	+		PP_0832	0.42	-2.0
969,529	+		PP_0832	0.42	-1.7
969,531	+		PP_0832	0.42	-2.2
969,532	-		PP_0832	0.42	+0.3
969,569	-		PP_0832	0.46	+0.3
969,753	+		PP_0832	0.63	-1.2
970,037	-				+0.3
970,076	-				-0.2
970,254	+				-0.9
970,254	+				-2.0
970,254	+				-1.4
970,255	-				-2.3
970,255	-				-0.7
970,255	-				-2.2
970,435	+		PP_0833	0.25	-1.6
970,567	+		PP_0833	0.37	-0.5
970,716	+		PP_0833	0.51	-0.5
970,955	+		PP_0833	0.72	-1.6
970,985	+		PP_0833	0.75	-1.6
971,060	+		PP_0833	0.81	-1.7
971,085	+		PP_0833	0.84	-0.9
971,135	+		PP_0833	0.88	-1.7