Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0596 and PP_0597 are separated by 73 nucleotides PP_0597 and PP_16SD are separated by 750 nucleotides
PP_0596: PP_0596 - Omega-amino acid--pyruvate aminotransferase, at 694,160 to 695,506
_0596
PP_0597: PP_0597 - methylmalonate-semialdehyde dehydrogenase, at 695,580 to 697,073
_0597
PP_16SD: PP_16SD - 16S ribosomal RNA, at 697,824 to 699,345
_16SD
Position (kb) 695
696
697
698 Strain fitness (log2 ratio) -2
-1
0
1 at 694.616 kb on + strand, within PP_0596 at 694.617 kb on - strand, within PP_0596 at 694.639 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.717 kb on - strand, within PP_0596 at 694.717 kb on - strand, within PP_0596 at 694.881 kb on - strand, within PP_0596 at 695.079 kb on - strand, within PP_0596 at 695.111 kb on + strand, within PP_0596 at 695.112 kb on - strand, within PP_0596 at 695.136 kb on - strand, within PP_0596 at 695.136 kb on - strand, within PP_0596 at 695.141 kb on + strand, within PP_0596 at 695.142 kb on - strand, within PP_0596 at 695.142 kb on - strand, within PP_0596 at 695.278 kb on + strand, within PP_0596 at 695.297 kb on + strand, within PP_0596 at 695.297 kb on + strand, within PP_0596 at 695.298 kb on - strand, within PP_0596 at 695.357 kb on + strand, within PP_0596 at 695.358 kb on - strand, within PP_0596 at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.394 kb on - strand at 695.394 kb on - strand at 695.394 kb on - strand at 695.397 kb on + strand at 695.440 kb on + strand at 695.531 kb on + strand at 695.532 kb on - strand at 695.532 kb on - strand at 695.532 kb on - strand at 695.565 kb on + strand at 695.619 kb on - strand at 695.891 kb on + strand, within PP_0597 at 696.054 kb on + strand, within PP_0597 at 696.054 kb on + strand, within PP_0597 at 696.054 kb on + strand, within PP_0597 at 696.126 kb on + strand, within PP_0597 at 696.126 kb on + strand, within PP_0597 at 696.126 kb on + strand, within PP_0597 at 696.127 kb on - strand, within PP_0597 at 696.127 kb on - strand, within PP_0597 at 696.127 kb on - strand, within PP_0597 at 696.127 kb on - strand, within PP_0597 at 696.270 kb on + strand, within PP_0597 at 696.270 kb on + strand, within PP_0597 at 696.271 kb on - strand, within PP_0597 at 696.271 kb on - strand, within PP_0597 at 696.276 kb on + strand, within PP_0597 at 696.277 kb on - strand, within PP_0597 at 696.277 kb on - strand, within PP_0597 at 696.277 kb on - strand, within PP_0597 at 696.307 kb on + strand, within PP_0597 at 696.307 kb on + strand, within PP_0597 at 696.308 kb on - strand, within PP_0597 at 696.651 kb on - strand, within PP_0597 at 696.663 kb on + strand, within PP_0597 at 696.663 kb on + strand, within PP_0597 at 696.663 kb on + strand, within PP_0597 at 696.664 kb on - strand, within PP_0597 at 696.714 kb on + strand, within PP_0597 at 696.714 kb on + strand, within PP_0597 at 696.714 kb on + strand, within PP_0597 at 696.714 kb on + strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.716 kb on + strand, within PP_0597 at 696.717 kb on - strand, within PP_0597 at 696.717 kb on - strand, within PP_0597 at 696.761 kb on + strand, within PP_0597 at 696.761 kb on + strand, within PP_0597 at 696.762 kb on - strand, within PP_0597 at 696.801 kb on + strand, within PP_0597 at 696.802 kb on - strand, within PP_0597 at 696.818 kb on + strand, within PP_0597 at 696.818 kb on + strand, within PP_0597 at 696.819 kb on - strand, within PP_0597 at 696.819 kb on - strand, within PP_0597 at 696.819 kb on - strand, within PP_0597 at 696.819 kb on - strand, within PP_0597 at 696.824 kb on + strand, within PP_0597 at 696.825 kb on - strand, within PP_0597 at 696.825 kb on - strand, within PP_0597 at 696.875 kb on + strand, within PP_0597 at 696.875 kb on + strand, within PP_0597 at 696.876 kb on - strand, within PP_0597 at 696.876 kb on - strand, within PP_0597 at 696.893 kb on - strand, within PP_0597 at 696.893 kb on - strand, within PP_0597 at 696.966 kb on + strand at 696.967 kb on - strand at 696.990 kb on + strand at 696.990 kb on + strand at 696.991 kb on - strand at 696.991 kb on - strand at 697.072 kb on - strand at 697.072 kb on - strand at 697.080 kb on + strand at 697.081 kb on - strand at 697.353 kb on + strand at 697.353 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 694,616 + PP_0596 0.34 +0.6 694,617 - PP_0596 0.34 -0.6 694,639 + PP_0596 0.36 -0.3 694,716 + PP_0596 0.41 +1.1 694,716 + PP_0596 0.41 -0.7 694,716 + PP_0596 0.41 -1.1 694,716 + PP_0596 0.41 -1.3 694,716 + PP_0596 0.41 +0.3 694,717 - PP_0596 0.41 -2.4 694,717 - PP_0596 0.41 -0.7 694,881 - PP_0596 0.54 +0.6 695,079 - PP_0596 0.68 +0.5 695,111 + PP_0596 0.71 +0.2 695,112 - PP_0596 0.71 +1.5 695,136 - PP_0596 0.72 +0.3 695,136 - PP_0596 0.72 -1.3 695,141 + PP_0596 0.73 +0.5 695,142 - PP_0596 0.73 -0.1 695,142 - PP_0596 0.73 -0.2 695,278 + PP_0596 0.83 +0.6 695,297 + PP_0596 0.84 +0.2 695,297 + PP_0596 0.84 +1.0 695,298 - PP_0596 0.84 -0.8 695,357 + PP_0596 0.89 +1.1 695,358 - PP_0596 0.89 -0.0 695,393 + -0.5 695,393 + +0.8 695,393 + -0.5 695,393 + +1.2 695,393 + -1.3 695,393 + -1.3 695,393 + +0.0 695,394 - +0.2 695,394 - +0.5 695,394 - -1.2 695,397 + +0.8 695,440 + +0.6 695,531 + +0.1 695,532 - +0.1 695,532 - +1.0 695,532 - +0.3 695,565 + +0.0 695,619 - -0.2 695,891 + PP_0597 0.21 -0.9 696,054 + PP_0597 0.32 -0.9 696,054 + PP_0597 0.32 -0.7 696,054 + PP_0597 0.32 -0.6 696,126 + PP_0597 0.37 -1.3 696,126 + PP_0597 0.37 -0.7 696,126 + PP_0597 0.37 +1.3 696,127 - PP_0597 0.37 -0.4 696,127 - PP_0597 0.37 -0.6 696,127 - PP_0597 0.37 -0.1 696,127 - PP_0597 0.37 +0.2 696,270 + PP_0597 0.46 -0.5 696,270 + PP_0597 0.46 -0.4 696,271 - PP_0597 0.46 -0.6 696,271 - PP_0597 0.46 -1.0 696,276 + PP_0597 0.47 +0.5 696,277 - PP_0597 0.47 +1.2 696,277 - PP_0597 0.47 -0.3 696,277 - PP_0597 0.47 +0.7 696,307 + PP_0597 0.49 -0.1 696,307 + PP_0597 0.49 -0.2 696,308 - PP_0597 0.49 +0.2 696,651 - PP_0597 0.72 -0.7 696,663 + PP_0597 0.72 -0.9 696,663 + PP_0597 0.72 -0.2 696,663 + PP_0597 0.72 +0.6 696,664 - PP_0597 0.73 +0.9 696,714 + PP_0597 0.76 -0.9 696,714 + PP_0597 0.76 +0.6 696,714 + PP_0597 0.76 -1.1 696,714 + PP_0597 0.76 -1.6 696,715 - PP_0597 0.76 -0.6 696,715 - PP_0597 0.76 +1.1 696,715 - PP_0597 0.76 +1.0 696,715 - PP_0597 0.76 -0.9 696,715 - PP_0597 0.76 +0.8 696,716 + PP_0597 0.76 -1.2 696,717 - PP_0597 0.76 -0.3 696,717 - PP_0597 0.76 +0.4 696,761 + PP_0597 0.79 -1.4 696,761 + PP_0597 0.79 -0.1 696,762 - PP_0597 0.79 +0.8 696,801 + PP_0597 0.82 +1.3 696,802 - PP_0597 0.82 +0.9 696,818 + PP_0597 0.83 -1.0 696,818 + PP_0597 0.83 -0.8 696,819 - PP_0597 0.83 -1.9 696,819 - PP_0597 0.83 -0.3 696,819 - PP_0597 0.83 -0.4 696,819 - PP_0597 0.83 -0.6 696,824 + PP_0597 0.83 +0.2 696,825 - PP_0597 0.83 -0.1 696,825 - PP_0597 0.83 +0.5 696,875 + PP_0597 0.87 +0.3 696,875 + PP_0597 0.87 +0.2 696,876 - PP_0597 0.87 -0.8 696,876 - PP_0597 0.87 +0.5 696,893 - PP_0597 0.88 +1.4 696,893 - PP_0597 0.88 +0.1 696,966 + -1.2 696,967 - +0.3 696,990 + -1.7 696,990 + +0.9 696,991 - +0.2 696,991 - +1.1 697,072 - +1.1 697,072 - -0.1 697,080 + +0.6 697,081 - +0.5 697,353 + -1.0 697,353 + -0.3
Or see this region's nucleotide sequence