Strain Fitness in Pseudomonas putida KT2440 around PP_0248

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0247 and PP_0248 are separated by 97 nucleotidesPP_0248 and PP_0249 overlap by 4 nucleotidesPP_0249 and PP_0250 overlap by 29 nucleotides PP_0247: PP_0247 - Osmolarity sensor protein EnvZ, at 301,836 to 303,149 _0247 PP_0248: PP_0248 - Probable alpha-L-glutamate ligase, at 303,247 to 304,152 _0248 PP_0249: PP_0249 - conserved protein of unknown function, at 304,149 to 304,769 _0249 PP_0250: PP_0250 - heat shock protein Hsp15 involved in ribosome recycling, at 304,741 to 305,142 _0250 Position (kb) 303 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 302.448 kb on + strand, within PP_0247at 302.448 kb on + strand, within PP_0247at 302.448 kb on + strand, within PP_0247at 302.449 kb on - strand, within PP_0247at 302.449 kb on - strand, within PP_0247at 302.731 kb on - strand, within PP_0247at 302.731 kb on - strand, within PP_0247at 302.874 kb on + strand, within PP_0247at 302.874 kb on + strand, within PP_0247at 302.874 kb on + strand, within PP_0247at 302.874 kb on + strand, within PP_0247at 302.874 kb on + strand, within PP_0247at 302.874 kb on + strand, within PP_0247at 302.875 kb on - strand, within PP_0247at 302.875 kb on - strand, within PP_0247at 302.875 kb on - strand, within PP_0247at 302.875 kb on - strand, within PP_0247at 302.875 kb on - strand, within PP_0247at 302.901 kb on + strand, within PP_0247at 302.902 kb on - strand, within PP_0247at 302.902 kb on - strand, within PP_0247at 303.137 kb on + strandat 303.185 kb on - strandat 303.200 kb on + strandat 303.562 kb on + strand, within PP_0248at 303.562 kb on + strand, within PP_0248at 303.617 kb on + strand, within PP_0248at 303.617 kb on + strand, within PP_0248at 303.618 kb on - strand, within PP_0248at 303.818 kb on - strand, within PP_0248at 303.898 kb on + strand, within PP_0248at 303.898 kb on + strand, within PP_0248at 303.898 kb on + strand, within PP_0248at 303.898 kb on + strand, within PP_0248at 303.898 kb on + strand, within PP_0248at 303.898 kb on + strand, within PP_0248at 303.898 kb on + strand, within PP_0248at 303.899 kb on - strand, within PP_0248at 303.899 kb on - strand, within PP_0248at 303.938 kb on + strand, within PP_0248at 303.938 kb on + strand, within PP_0248at 303.938 kb on + strand, within PP_0248at 303.938 kb on + strand, within PP_0248at 303.938 kb on + strand, within PP_0248at 303.938 kb on + strand, within PP_0248at 303.938 kb on + strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.939 kb on - strand, within PP_0248at 303.958 kb on + strand, within PP_0248at 303.958 kb on + strand, within PP_0248at 303.958 kb on + strand, within PP_0248at 303.958 kb on + strand, within PP_0248at 303.959 kb on - strand, within PP_0248at 303.959 kb on - strand, within PP_0248at 303.959 kb on - strand, within PP_0248at 304.040 kb on + strand, within PP_0248at 304.041 kb on - strand, within PP_0248at 304.116 kb on - strandat 304.196 kb on + strandat 304.203 kb on + strandat 304.203 kb on + strandat 304.203 kb on + strandat 304.203 kb on + strandat 304.203 kb on + strandat 304.203 kb on + strandat 304.204 kb on - strandat 304.204 kb on - strandat 304.207 kb on + strandat 304.208 kb on - strandat 304.208 kb on - strandat 304.242 kb on + strand, within PP_0249at 304.665 kb on - strand, within PP_0249at 304.665 kb on - strand, within PP_0249at 304.665 kb on - strand, within PP_0249at 304.692 kb on + strand, within PP_0249at 304.692 kb on + strand, within PP_0249at 304.692 kb on + strand, within PP_0249at 304.693 kb on - strand, within PP_0249at 304.693 kb on - strand, within PP_0249at 304.693 kb on - strand, within PP_0249at 304.703 kb on - strand, within PP_0249at 304.703 kb on - strand, within PP_0249at 304.703 kb on - strand, within PP_0249at 304.703 kb on - strand, within PP_0249at 304.703 kb on - strand, within PP_0249at 304.705 kb on + strand, within PP_0249at 304.705 kb on + strand, within PP_0249at 304.705 kb on + strand, within PP_0249at 304.705 kb on + strand, within PP_0249at 304.705 kb on + strand, within PP_0249at 304.706 kb on - strand, within PP_0249at 304.706 kb on - strand, within PP_0249at 304.706 kb on - strand, within PP_0249at 304.706 kb on - strand, within PP_0249at 304.999 kb on + strand, within PP_0250at 305.052 kb on + strand, within PP_0250at 305.053 kb on - strand, within PP_0250

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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302,448 + PP_0247 0.47 -1.4
302,448 + PP_0247 0.47 +0.6
302,448 + PP_0247 0.47 +0.7
302,449 - PP_0247 0.47 +0.8
302,449 - PP_0247 0.47 +0.6
302,731 - PP_0247 0.68 -2.8
302,731 - PP_0247 0.68 +0.9
302,874 + PP_0247 0.79 -0.3
302,874 + PP_0247 0.79 -2.3
302,874 + PP_0247 0.79 -0.2
302,874 + PP_0247 0.79 +1.0
302,874 + PP_0247 0.79 +0.2
302,874 + PP_0247 0.79 +0.8
302,875 - PP_0247 0.79 -0.6
302,875 - PP_0247 0.79 +0.1
302,875 - PP_0247 0.79 -0.7
302,875 - PP_0247 0.79 +0.7
302,875 - PP_0247 0.79 +0.0
302,901 + PP_0247 0.81 -0.3
302,902 - PP_0247 0.81 +1.4
302,902 - PP_0247 0.81 -0.6
303,137 + -0.3
303,185 - -0.8
303,200 + +0.3
303,562 + PP_0248 0.35 -0.8
303,562 + PP_0248 0.35 +0.5
303,617 + PP_0248 0.41 -2.7
303,617 + PP_0248 0.41 -0.1
303,618 - PP_0248 0.41 -1.9
303,818 - PP_0248 0.63 -3.5
303,898 + PP_0248 0.72 +0.4
303,898 + PP_0248 0.72 -1.6
303,898 + PP_0248 0.72 +0.2
303,898 + PP_0248 0.72 -0.8
303,898 + PP_0248 0.72 -0.8
303,898 + PP_0248 0.72 -1.4
303,898 + PP_0248 0.72 -0.7
303,899 - PP_0248 0.72 -1.2
303,899 - PP_0248 0.72 -2.2
303,938 + PP_0248 0.76 -2.1
303,938 + PP_0248 0.76 +0.0
303,938 + PP_0248 0.76 -0.9
303,938 + PP_0248 0.76 +2.4
303,938 + PP_0248 0.76 -1.4
303,938 + PP_0248 0.76 -0.5
303,938 + PP_0248 0.76 -1.6
303,939 - PP_0248 0.76 -1.6
303,939 - PP_0248 0.76 -0.4
303,939 - PP_0248 0.76 +0.7
303,939 - PP_0248 0.76 -2.5
303,939 - PP_0248 0.76 -2.8
303,939 - PP_0248 0.76 -1.9
303,939 - PP_0248 0.76 -2.5
303,939 - PP_0248 0.76 -1.4
303,958 + PP_0248 0.78 -0.0
303,958 + PP_0248 0.78 -3.2
303,958 + PP_0248 0.78 -0.3
303,958 + PP_0248 0.78 -0.7
303,959 - PP_0248 0.79 -2.5
303,959 - PP_0248 0.79 -0.5
303,959 - PP_0248 0.79 -2.4
304,040 + PP_0248 0.88 -1.0
304,041 - PP_0248 0.88 -0.4
304,116 - -0.8
304,196 + -1.4
304,203 + -1.1
304,203 + -0.6
304,203 + -1.8
304,203 + -0.6
304,203 + -2.9
304,203 + -0.5
304,204 - +0.2
304,204 - -0.1
304,207 + -0.1
304,208 - +0.4
304,208 - +0.4
304,242 + PP_0249 0.15 +1.2
304,665 - PP_0249 0.83 -1.5
304,665 - PP_0249 0.83 +0.8
304,665 - PP_0249 0.83 -3.1
304,692 + PP_0249 0.87 -0.6
304,692 + PP_0249 0.87 +0.4
304,692 + PP_0249 0.87 -0.6
304,693 - PP_0249 0.88 -1.3
304,693 - PP_0249 0.88 -0.6
304,693 - PP_0249 0.88 -1.0
304,703 - PP_0249 0.89 -1.0
304,703 - PP_0249 0.89 -0.6
304,703 - PP_0249 0.89 -0.2
304,703 - PP_0249 0.89 +1.2
304,703 - PP_0249 0.89 -2.3
304,705 + PP_0249 0.90 +0.9
304,705 + PP_0249 0.90 +0.1
304,705 + PP_0249 0.90 -0.4
304,705 + PP_0249 0.90 +0.2
304,705 + PP_0249 0.90 -1.3
304,706 - PP_0249 0.90 -1.0
304,706 - PP_0249 0.90 +0.6
304,706 - PP_0249 0.90 -0.6
304,706 - PP_0249 0.90 +0.8
304,999 + PP_0250 0.64 +0.3
305,052 + PP_0250 0.77 -3.2
305,053 - PP_0250 0.78 +0.8

Or see this region's nucleotide sequence