Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0194 and PP_0195 overlap by 22 nucleotides PP_0195 and PP_0196 are separated by 50 nucleotides PP_0196 and PP_0197 overlap by 1 nucleotides PP_0197 and PP_0198 are separated by 99 nucleotides
PP_0194: PP_0194 - Transcriptional regulatory protein AlgP, at 244,325 to 245,314
_0194
PP_0195: PP_0195 - conserved protein of unknown function, at 245,293 to 245,772
_0195
PP_0196: PP_0196 - putative of ABC superfamily informational factor: ATP-binding components, at 245,823 to 247,733
_0196
PP_0197: PP_0197 - conserved protein of unknown function, at 247,733 to 248,320
_0197
PP_0198: PP_0198 - putative transporter, at 248,420 to 249,052
_0198
Position (kb) 245
246
247
248 Strain fitness (log2 ratio) -1
0
1
2 at 245.053 kb on + strand, within PP_0194 at 245.629 kb on + strand, within PP_0195 at 245.630 kb on - strand, within PP_0195 at 245.735 kb on + strand at 245.735 kb on + strand at 245.735 kb on + strand at 245.736 kb on - strand at 245.807 kb on - strand at 245.848 kb on + strand at 245.849 kb on - strand at 245.849 kb on - strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.873 kb on - strand at 245.873 kb on - strand at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.070 kb on - strand, within PP_0196 at 246.070 kb on - strand, within PP_0196 at 246.190 kb on - strand, within PP_0196 at 246.190 kb on - strand, within PP_0196 at 246.190 kb on - strand at 246.192 kb on - strand, within PP_0196 at 246.502 kb on - strand, within PP_0196 at 246.567 kb on + strand, within PP_0196 at 246.567 kb on + strand, within PP_0196 at 246.607 kb on - strand, within PP_0196 at 246.607 kb on - strand, within PP_0196 at 246.842 kb on + strand, within PP_0196 at 246.842 kb on + strand, within PP_0196 at 246.952 kb on + strand, within PP_0196 at 246.957 kb on + strand, within PP_0196 at 246.957 kb on + strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 247.365 kb on + strand, within PP_0196 at 247.366 kb on - strand, within PP_0196 at 247.366 kb on - strand, within PP_0196 at 247.366 kb on - strand, within PP_0196 at 247.412 kb on + strand, within PP_0196 at 247.587 kb on + strand at 247.835 kb on - strand, within PP_0197 at 248.165 kb on - strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.234 kb on - strand, within PP_0197 at 248.234 kb on - strand, within PP_0197 at 248.281 kb on - strand at 248.380 kb on - strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.434 kb on - strand at 248.434 kb on - strand at 248.434 kb on - strand at 248.434 kb on - strand at 248.672 kb on + strand, within PP_0198 at 248.681 kb on + strand, within PP_0198 at 248.681 kb on + strand, within PP_0198 at 248.682 kb on - strand, within PP_0198
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 245,053 + PP_0194 0.74 +0.4 245,629 + PP_0195 0.70 +0.8 245,630 - PP_0195 0.70 +0.4 245,735 + +1.1 245,735 + +1.5 245,735 + -1.3 245,736 - +1.1 245,807 - +0.6 245,848 + +1.2 245,849 - +0.9 245,849 - +1.1 245,872 + +0.4 245,872 + +1.5 245,872 + +0.7 245,872 + +1.2 245,873 - +1.5 245,873 - +0.7 246,069 + PP_0196 0.13 +0.4 246,069 + PP_0196 0.13 -0.6 246,069 + PP_0196 0.13 +1.1 246,069 + PP_0196 0.13 +0.6 246,069 + PP_0196 0.13 +1.0 246,070 - PP_0196 0.13 +0.9 246,070 - PP_0196 0.13 +1.6 246,190 - PP_0196 0.19 +1.3 246,190 - PP_0196 0.19 +0.4 246,190 - -0.1 246,192 - PP_0196 0.19 +0.3 246,502 - PP_0196 0.36 +1.9 246,567 + PP_0196 0.39 +0.5 246,567 + PP_0196 0.39 -0.3 246,607 - PP_0196 0.41 -0.8 246,607 - PP_0196 0.41 +0.5 246,842 + PP_0196 0.53 -0.3 246,842 + PP_0196 0.53 +1.2 246,952 + PP_0196 0.59 +1.0 246,957 + PP_0196 0.59 +0.1 246,957 + PP_0196 0.59 +1.2 246,958 - PP_0196 0.59 +2.7 246,958 - PP_0196 0.59 +0.7 246,958 - PP_0196 0.59 +0.8 246,958 - PP_0196 0.59 +0.7 246,958 - PP_0196 0.59 +1.7 247,365 + PP_0196 0.81 +0.6 247,366 - PP_0196 0.81 +1.0 247,366 - PP_0196 0.81 +1.4 247,366 - PP_0196 0.81 -1.4 247,412 + PP_0196 0.83 +0.4 247,587 + +0.1 247,835 - PP_0197 0.17 +0.8 248,165 - PP_0197 0.73 +1.0 248,233 + PP_0197 0.85 +0.6 248,233 + PP_0197 0.85 +0.9 248,233 + PP_0197 0.85 -1.2 248,233 + PP_0197 0.85 +1.0 248,234 - PP_0197 0.85 +1.0 248,234 - PP_0197 0.85 -0.6 248,281 - +0.3 248,380 - +0.3 248,433 + -0.5 248,433 + -0.1 248,433 + +0.4 248,433 + -0.6 248,433 + -0.2 248,434 - +0.1 248,434 - +1.0 248,434 - -0.7 248,434 - +0.0 248,672 + PP_0198 0.40 +0.6 248,681 + PP_0198 0.41 -0.7 248,681 + PP_0198 0.41 -0.7 248,682 - PP_0198 0.41 +0.6
Or see this region's nucleotide sequence