Strain Fitness in Pseudomonas putida KT2440 around PP_0171

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0170 and PP_0171 are separated by 6 nucleotidesPP_0171 and PP_0172 are separated by 14 nucleotidesPP_0172 and PP_0173 are separated by 117 nucleotides PP_0170: PP_0170 - ABC transporter, periplasmic binding protein, at 222,146 to 223,165 _0170 PP_0171: PP_0171 - ABC transporter, ATP-binding protein, at 223,172 to 224,035 _0171 PP_0172: PP_0172 - ABC transporter, permease protein, at 224,050 to 224,913 _0172 PP_0173: PP_0173 - putative transcriptional factor-related protein, at 225,031 to 225,660 _0173 Position (kb) 223 224 225Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 222.253 kb on + strand, within PP_0170at 222.253 kb on + strand, within PP_0170at 222.515 kb on + strand, within PP_0170at 222.518 kb on + strand, within PP_0170at 222.518 kb on + strand, within PP_0170at 222.518 kb on + strand, within PP_0170at 222.518 kb on + strand, within PP_0170at 222.519 kb on - strand, within PP_0170at 222.578 kb on - strand, within PP_0170at 222.578 kb on - strand, within PP_0170at 222.627 kb on - strand, within PP_0170at 222.627 kb on - strand, within PP_0170at 222.659 kb on + strand, within PP_0170at 222.660 kb on - strand, within PP_0170at 222.660 kb on - strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.678 kb on - strand, within PP_0170at 222.678 kb on - strand, within PP_0170at 222.678 kb on - strand, within PP_0170at 222.816 kb on - strand, within PP_0170at 222.822 kb on + strand, within PP_0170at 222.856 kb on + strand, within PP_0170at 222.890 kb on + strand, within PP_0170at 222.890 kb on + strand, within PP_0170at 222.965 kb on + strand, within PP_0170at 222.965 kb on + strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 223.031 kb on + strand, within PP_0170at 223.046 kb on - strand, within PP_0170at 223.061 kb on + strand, within PP_0170at 223.062 kb on - strand, within PP_0170at 223.062 kb on - strand, within PP_0170at 223.127 kb on + strandat 223.267 kb on + strand, within PP_0171at 223.267 kb on + strand, within PP_0171at 223.268 kb on - strand, within PP_0171at 223.268 kb on - strand, within PP_0171at 223.335 kb on + strand, within PP_0171at 223.335 kb on + strand, within PP_0171at 223.336 kb on - strand, within PP_0171at 223.336 kb on - strand, within PP_0171at 223.622 kb on + strand, within PP_0171at 223.623 kb on - strand, within PP_0171at 223.623 kb on - strand, within PP_0171at 223.645 kb on + strand, within PP_0171at 223.646 kb on - strand, within PP_0171at 223.646 kb on - strand, within PP_0171at 223.891 kb on + strand, within PP_0171at 223.891 kb on + strand, within PP_0171at 223.892 kb on - strand, within PP_0171at 223.892 kb on - strand, within PP_0171at 223.892 kb on - strand, within PP_0171at 223.901 kb on + strand, within PP_0171at 223.952 kb on - strandat 223.981 kb on + strandat 224.058 kb on + strandat 224.059 kb on - strandat 224.059 kb on - strandat 224.059 kb on - strandat 224.077 kb on + strandat 224.078 kb on - strandat 224.115 kb on - strandat 224.177 kb on + strand, within PP_0172at 224.177 kb on + strand, within PP_0172at 224.178 kb on - strand, within PP_0172at 224.178 kb on - strand, within PP_0172at 224.178 kb on - strand, within PP_0172at 224.178 kb on - strand, within PP_0172at 224.325 kb on - strand, within PP_0172at 224.327 kb on + strand, within PP_0172at 224.342 kb on - strand, within PP_0172at 224.342 kb on - strand, within PP_0172at 224.342 kb on - strand, within PP_0172at 224.412 kb on - strand, within PP_0172at 224.531 kb on + strand, within PP_0172at 224.532 kb on - strand, within PP_0172at 224.550 kb on + strand, within PP_0172at 224.550 kb on + strand, within PP_0172at 224.550 kb on + strand, within PP_0172at 224.550 kb on + strand, within PP_0172at 224.550 kb on + strand, within PP_0172at 224.550 kb on + strand, within PP_0172at 224.551 kb on - strand, within PP_0172at 224.551 kb on - strand, within PP_0172at 224.551 kb on - strand, within PP_0172at 224.554 kb on + strand, within PP_0172at 224.554 kb on + strand, within PP_0172at 224.555 kb on - strand, within PP_0172at 224.605 kb on + strand, within PP_0172at 224.605 kb on + strand, within PP_0172at 224.605 kb on + strand, within PP_0172at 224.606 kb on - strand, within PP_0172at 224.606 kb on - strand, within PP_0172at 224.606 kb on - strand, within PP_0172at 224.606 kb on - strand, within PP_0172at 224.606 kb on - strand, within PP_0172at 224.606 kb on - strand, within PP_0172at 224.631 kb on - strand, within PP_0172at 224.631 kb on - strand, within PP_0172at 224.707 kb on - strand, within PP_0172at 224.712 kb on + strand, within PP_0172at 224.712 kb on + strand, within PP_0172at 224.712 kb on + strand, within PP_0172at 224.712 kb on + strand, within PP_0172at 224.713 kb on - strand, within PP_0172at 224.714 kb on + strand, within PP_0172at 224.727 kb on - strand, within PP_0172at 224.727 kb on - strand, within PP_0172at 224.767 kb on + strand, within PP_0172at 224.768 kb on - strand, within PP_0172at 224.768 kb on - strand, within PP_0172at 224.768 kb on - strand, within PP_0172at 224.768 kb on - strand, within PP_0172at 224.768 kb on - strand, within PP_0172at 224.794 kb on + strand, within PP_0172at 224.795 kb on - strand, within PP_0172at 224.796 kb on + strand, within PP_0172at 224.868 kb on + strandat 224.919 kb on - strandat 224.954 kb on + strandat 224.954 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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222,253 + PP_0170 0.10 +1.8
222,253 + PP_0170 0.10 -0.5
222,515 + PP_0170 0.36 +1.1
222,518 + PP_0170 0.36 -0.1
222,518 + PP_0170 0.36 +0.8
222,518 + PP_0170 0.36 -0.7
222,518 + PP_0170 0.36 +0.8
222,519 - PP_0170 0.37 -0.0
222,578 - PP_0170 0.42 -0.2
222,578 - PP_0170 0.42 +0.3
222,627 - PP_0170 0.47 +0.1
222,627 - PP_0170 0.47 +2.0
222,659 + PP_0170 0.50 +0.2
222,660 - PP_0170 0.50 -1.8
222,660 - PP_0170 0.50 +0.7
222,677 + PP_0170 0.52 -1.0
222,677 + PP_0170 0.52 -0.2
222,677 + PP_0170 0.52 -0.9
222,677 + PP_0170 0.52 +0.9
222,677 + PP_0170 0.52 -2.1
222,678 - PP_0170 0.52 +1.9
222,678 - PP_0170 0.52 -0.1
222,678 - PP_0170 0.52 -0.2
222,816 - PP_0170 0.66 +0.1
222,822 + PP_0170 0.66 -1.6
222,856 + PP_0170 0.70 -0.2
222,890 + PP_0170 0.73 +0.7
222,890 + PP_0170 0.73 -0.4
222,965 + PP_0170 0.80 +0.7
222,965 + PP_0170 0.80 -0.9
222,966 - PP_0170 0.80 +1.3
222,966 - PP_0170 0.80 -0.2
222,966 - PP_0170 0.80 -0.5
222,966 - PP_0170 0.80 +0.8
222,966 - PP_0170 0.80 -0.6
222,966 - PP_0170 0.80 +1.0
222,966 - PP_0170 0.80 +1.2
222,966 - PP_0170 0.80 +1.9
222,966 - PP_0170 0.80 +0.0
223,031 + PP_0170 0.87 -0.1
223,046 - PP_0170 0.88 +0.7
223,061 + PP_0170 0.90 +1.0
223,062 - PP_0170 0.90 +0.8
223,062 - PP_0170 0.90 -1.7
223,127 + +1.0
223,267 + PP_0171 0.11 -1.1
223,267 + PP_0171 0.11 -2.1
223,268 - PP_0171 0.11 +1.1
223,268 - PP_0171 0.11 -0.5
223,335 + PP_0171 0.19 -0.5
223,335 + PP_0171 0.19 -0.4
223,336 - PP_0171 0.19 +0.9
223,336 - PP_0171 0.19 +0.8
223,622 + PP_0171 0.52 -0.3
223,623 - PP_0171 0.52 +1.8
223,623 - PP_0171 0.52 -0.1
223,645 + PP_0171 0.55 +0.4
223,646 - PP_0171 0.55 +1.1
223,646 - PP_0171 0.55 +0.5
223,891 + PP_0171 0.83 -0.3
223,891 + PP_0171 0.83 +1.2
223,892 - PP_0171 0.83 +1.4
223,892 - PP_0171 0.83 +2.1
223,892 - PP_0171 0.83 -0.2
223,901 + PP_0171 0.84 +1.9
223,952 - +0.8
223,981 + +0.4
224,058 + +1.5
224,059 - +0.7
224,059 - -0.5
224,059 - -1.8
224,077 + +0.1
224,078 - +0.9
224,115 - -0.4
224,177 + PP_0172 0.15 -0.3
224,177 + PP_0172 0.15 +1.1
224,178 - PP_0172 0.15 -0.9
224,178 - PP_0172 0.15 -0.4
224,178 - PP_0172 0.15 +0.2
224,178 - PP_0172 0.15 -0.1
224,325 - PP_0172 0.32 +0.2
224,327 + PP_0172 0.32 -0.2
224,342 - PP_0172 0.34 +0.5
224,342 - PP_0172 0.34 +0.5
224,342 - PP_0172 0.34 +0.2
224,412 - PP_0172 0.42 +0.3
224,531 + PP_0172 0.56 +0.2
224,532 - PP_0172 0.56 -1.1
224,550 + PP_0172 0.58 +1.2
224,550 + PP_0172 0.58 -1.2
224,550 + PP_0172 0.58 +0.5
224,550 + PP_0172 0.58 -0.1
224,550 + PP_0172 0.58 +2.3
224,550 + PP_0172 0.58 +1.4
224,551 - PP_0172 0.58 -1.7
224,551 - PP_0172 0.58 +0.4
224,551 - PP_0172 0.58 +0.4
224,554 + PP_0172 0.58 +0.6
224,554 + PP_0172 0.58 -2.8
224,555 - PP_0172 0.58 +1.8
224,605 + PP_0172 0.64 -2.2
224,605 + PP_0172 0.64 -1.3
224,605 + PP_0172 0.64 +0.1
224,606 - PP_0172 0.64 +0.5
224,606 - PP_0172 0.64 +1.6
224,606 - PP_0172 0.64 +0.9
224,606 - PP_0172 0.64 +0.1
224,606 - PP_0172 0.64 +0.0
224,606 - PP_0172 0.64 -0.3
224,631 - PP_0172 0.67 +1.1
224,631 - PP_0172 0.67 +0.7
224,707 - PP_0172 0.76 +0.5
224,712 + PP_0172 0.77 +0.8
224,712 + PP_0172 0.77 +1.0
224,712 + PP_0172 0.77 +1.4
224,712 + PP_0172 0.77 +0.5
224,713 - PP_0172 0.77 -0.4
224,714 + PP_0172 0.77 +0.3
224,727 - PP_0172 0.78 +0.4
224,727 - PP_0172 0.78 -0.1
224,767 + PP_0172 0.83 +0.7
224,768 - PP_0172 0.83 +0.4
224,768 - PP_0172 0.83 +0.4
224,768 - PP_0172 0.83 +0.4
224,768 - PP_0172 0.83 +0.8
224,768 - PP_0172 0.83 +0.4
224,794 + PP_0172 0.86 -1.1
224,795 - PP_0172 0.86 +2.7
224,796 + PP_0172 0.86 +0.6
224,868 + +0.3
224,919 - -0.6
224,954 + +0.3
224,954 + +0.5

Or see this region's nucleotide sequence