Strain Fitness in Pseudomonas putida KT2440 around PP_0166

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0165 and PP_0166 are separated by 156 nucleotidesPP_0166 and PP_0167 overlap by 11 nucleotides PP_0165: PP_0165 - GGDEF domain protein, at 187,892 to 189,838 _0165 PP_0166: PP_0166 - HlyD family secretion protein, at 189,995 to 191,371 _0166 PP_0167: PP_0167 - Toxin secretion ATP-binding protein, at 191,361 to 193,517 _0167 Position (kb) 189 190 191 192Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 189.078 kb on + strand, within PP_0165at 189.078 kb on + strand, within PP_0165at 189.078 kb on + strand, within PP_0165at 189.079 kb on - strand, within PP_0165at 189.192 kb on + strand, within PP_0165at 189.192 kb on + strand, within PP_0165at 189.216 kb on + strand, within PP_0165at 189.232 kb on + strand, within PP_0165at 189.233 kb on - strand, within PP_0165at 189.647 kb on + strandat 189.648 kb on - strandat 189.716 kb on - strandat 189.789 kb on + strandat 189.860 kb on + strandat 189.860 kb on + strandat 189.861 kb on - strandat 189.934 kb on + strandat 189.934 kb on + strandat 189.935 kb on - strandat 189.935 kb on - strandat 189.964 kb on + strandat 189.965 kb on - strandat 190.047 kb on + strandat 190.047 kb on + strandat 190.047 kb on + strandat 190.047 kb on + strandat 190.047 kb on + strandat 190.047 kb on + strandat 190.048 kb on - strandat 190.168 kb on - strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.170 kb on + strand, within PP_0166at 190.171 kb on - strand, within PP_0166at 190.171 kb on - strand, within PP_0166at 190.171 kb on - strand, within PP_0166at 190.171 kb on - strand, within PP_0166at 190.171 kb on - strand, within PP_0166at 190.171 kb on - strand, within PP_0166at 190.174 kb on + strand, within PP_0166at 190.174 kb on + strand, within PP_0166at 190.174 kb on + strand, within PP_0166at 190.175 kb on - strand, within PP_0166at 190.175 kb on - strand, within PP_0166at 190.175 kb on - strand, within PP_0166at 190.175 kb on - strand, within PP_0166at 190.195 kb on + strand, within PP_0166at 190.242 kb on + strand, within PP_0166at 190.242 kb on + strand, within PP_0166at 190.242 kb on + strand, within PP_0166at 190.242 kb on + strand, within PP_0166at 190.242 kb on + strand, within PP_0166at 190.242 kb on + strand, within PP_0166at 190.242 kb on + strand, within PP_0166at 190.243 kb on - strand, within PP_0166at 190.243 kb on - strand, within PP_0166at 190.251 kb on + strand, within PP_0166at 190.251 kb on + strand, within PP_0166at 190.252 kb on - strand, within PP_0166at 190.252 kb on - strand, within PP_0166at 190.758 kb on + strand, within PP_0166at 190.758 kb on + strand, within PP_0166at 190.759 kb on - strand, within PP_0166at 190.759 kb on - strand, within PP_0166at 190.779 kb on + strand, within PP_0166at 190.864 kb on - strand, within PP_0166at 190.941 kb on - strand, within PP_0166at 191.162 kb on - strand, within PP_0166at 191.192 kb on + strand, within PP_0166at 191.192 kb on + strand, within PP_0166at 191.192 kb on + strand, within PP_0166at 191.192 kb on + strand, within PP_0166at 191.193 kb on - strand, within PP_0166at 191.193 kb on - strand, within PP_0166at 191.362 kb on + strandat 191.362 kb on + strandat 191.363 kb on - strandat 191.363 kb on - strandat 191.363 kb on - strandat 191.461 kb on - strandat 191.718 kb on + strandat 191.719 kb on - strand, within PP_0167at 191.831 kb on - strand, within PP_0167at 191.914 kb on + strand, within PP_0167at 191.915 kb on - strand, within PP_0167at 192.008 kb on + strand, within PP_0167at 192.008 kb on + strand, within PP_0167at 192.008 kb on + strand, within PP_0167at 192.008 kb on + strand, within PP_0167at 192.040 kb on + strand, within PP_0167at 192.041 kb on - strand, within PP_0167at 192.041 kb on - strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.235 kb on + strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.236 kb on - strand, within PP_0167at 192.283 kb on + strand, within PP_0167at 192.284 kb on - strand, within PP_0167at 192.284 kb on - strand, within PP_0167

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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189,078 + PP_0165 0.61 -2.8
189,078 + PP_0165 0.61 -1.5
189,078 + PP_0165 0.61 -1.5
189,079 - PP_0165 0.61 -2.9
189,192 + PP_0165 0.67 -2.8
189,192 + PP_0165 0.67 -2.1
189,216 + PP_0165 0.68 -1.5
189,232 + PP_0165 0.69 -2.8
189,233 - PP_0165 0.69 -2.9
189,647 + -2.1
189,648 - -0.8
189,716 - -2.6
189,789 + -3.5
189,860 + +0.6
189,860 + -1.2
189,861 - +0.2
189,934 + +0.1
189,934 + +0.6
189,935 - +1.0
189,935 - -1.3
189,964 + -0.8
189,965 - -1.0
190,047 + -2.8
190,047 + -2.6
190,047 + -2.8
190,047 + -2.1
190,047 + -3.2
190,047 + -2.7
190,048 - -4.0
190,168 - PP_0166 0.13 -2.8
190,170 + PP_0166 0.13 -2.9
190,170 + PP_0166 0.13 -2.5
190,170 + PP_0166 0.13 -1.6
190,170 + PP_0166 0.13 -3.8
190,170 + PP_0166 0.13 -2.6
190,170 + PP_0166 0.13 -3.1
190,170 + PP_0166 0.13 -3.1
190,170 + PP_0166 0.13 -2.3
190,171 - PP_0166 0.13 -1.5
190,171 - PP_0166 0.13 -1.4
190,171 - PP_0166 0.13 -2.0
190,171 - PP_0166 0.13 -0.8
190,171 - PP_0166 0.13 -4.1
190,171 - PP_0166 0.13 -1.3
190,174 + PP_0166 0.13 -2.7
190,174 + PP_0166 0.13 -2.3
190,174 + PP_0166 0.13 -3.6
190,175 - PP_0166 0.13 -1.8
190,175 - PP_0166 0.13 -2.8
190,175 - PP_0166 0.13 -0.4
190,175 - PP_0166 0.13 -2.6
190,195 + PP_0166 0.15 -0.7
190,242 + PP_0166 0.18 -1.6
190,242 + PP_0166 0.18 -3.1
190,242 + PP_0166 0.18 -1.6
190,242 + PP_0166 0.18 -3.6
190,242 + PP_0166 0.18 -3.4
190,242 + PP_0166 0.18 -4.0
190,242 + PP_0166 0.18 -1.9
190,243 - PP_0166 0.18 -3.7
190,243 - PP_0166 0.18 -1.8
190,251 + PP_0166 0.19 -2.8
190,251 + PP_0166 0.19 -4.0
190,252 - PP_0166 0.19 -2.0
190,252 - PP_0166 0.19 -2.0
190,758 + PP_0166 0.55 -2.8
190,758 + PP_0166 0.55 -1.2
190,759 - PP_0166 0.55 -2.6
190,759 - PP_0166 0.55 -2.9
190,779 + PP_0166 0.57 -1.7
190,864 - PP_0166 0.63 -2.9
190,941 - PP_0166 0.69 -1.8
191,162 - PP_0166 0.85 -3.4
191,192 + PP_0166 0.87 -4.3
191,192 + PP_0166 0.87 -3.7
191,192 + PP_0166 0.87 -2.5
191,192 + PP_0166 0.87 -2.3
191,193 - PP_0166 0.87 -1.5
191,193 - PP_0166 0.87 -2.8
191,362 + -2.6
191,362 + -3.6
191,363 - -3.4
191,363 - -0.3
191,363 - -1.3
191,461 - -3.8
191,718 + -1.1
191,719 - PP_0167 0.17 -1.5
191,831 - PP_0167 0.22 -3.0
191,914 + PP_0167 0.26 -2.0
191,915 - PP_0167 0.26 -2.9
192,008 + PP_0167 0.30 -4.0
192,008 + PP_0167 0.30 -3.5
192,008 + PP_0167 0.30 -3.6
192,008 + PP_0167 0.30 -2.8
192,040 + PP_0167 0.31 -1.9
192,041 - PP_0167 0.32 -2.1
192,041 - PP_0167 0.32 -2.1
192,235 + PP_0167 0.41 -1.4
192,235 + PP_0167 0.41 -1.4
192,235 + PP_0167 0.41 -2.2
192,235 + PP_0167 0.41 -1.8
192,235 + PP_0167 0.41 -2.7
192,236 - PP_0167 0.41 -3.8
192,236 - PP_0167 0.41 -2.5
192,236 - PP_0167 0.41 -1.4
192,236 - PP_0167 0.41 -2.1
192,236 - PP_0167 0.41 -2.7
192,236 - PP_0167 0.41 -4.1
192,283 + PP_0167 0.43 -1.3
192,284 - PP_0167 0.43 -2.4
192,284 - PP_0167 0.43 -2.6

Or see this region's nucleotide sequence