Strain Fitness in Pseudomonas putida KT2440 around PP_4538

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
5,153,551	+		PP_4537	0.24	+0.5
5,153,552	-		PP_4537	0.25	-0.4
5,153,631	-		PP_4537	0.34	-0.7
5,153,680	+		PP_4537	0.39	+1.3
5,153,680	+		PP_4537	0.39	+1.0
5,153,680	+		PP_4537	0.39	-0.6
5,153,686	+		PP_4537	0.40	+0.4
5,153,687	-		PP_4537	0.40	-1.2
5,153,702	-		PP_4537	0.42	+0.3
5,153,702	-		PP_4537	0.42	-0.1
5,153,702	-		PP_4537	0.42	-0.4
5,153,743	+		PP_4537	0.46	+1.2
5,153,744	-		PP_4537	0.46	+0.2
5,153,764	+		PP_4537	0.49	-1.2
5,153,764	+		PP_4537	0.49	+1.9
5,153,925	+		PP_4537	0.67	+0.3
5,153,925	+		PP_4537	0.67	-0.1
5,153,998	+		PP_4537	0.75	+0.1
5,153,998	+		PP_4537	0.75	-0.8
5,153,998	+				+2.8
5,153,998	+		PP_4537	0.75	-1.6
5,153,998	+		PP_4537	0.75	-0.3
5,153,998	+		PP_4537	0.75	+0.3
5,153,998	+		PP_4537	0.75	-0.0
5,153,998	+		PP_4537	0.75	-0.8
5,153,998	+		PP_4537	0.75	-0.7
5,153,998	+		PP_4537	0.75	+0.3
5,153,998	+		PP_4537	0.75	+1.1
5,153,999	-		PP_4537	0.76	-0.0
5,153,999	-		PP_4537	0.76	-2.8
5,153,999	-		PP_4537	0.76	-1.3
5,153,999	-		PP_4537	0.76	+1.1
5,153,999	-		PP_4537	0.76	-0.3
5,153,999	-		PP_4537	0.76	+0.2
5,153,999	-		PP_4537	0.76	-0.4
5,153,999	-		PP_4537	0.76	+0.2
5,154,010	+		PP_4537	0.77	-0.1
5,154,127	+				-0.3
5,154,128	-				+0.1
5,154,152	-				+0.5
5,154,244	+				-0.4
5,154,282	+				-0.3
5,154,283	-				+0.3
5,154,283	-				+0.2
5,154,335	+				-2.0
5,154,335	+				-0.1
5,154,336	-				+0.1
5,154,336	-				-0.4
5,154,336	-				-0.2
5,154,336	-				+1.5
5,154,336	-				+0.4
5,154,336	-				+0.9
5,154,336	-				+0.2
5,154,353	+				+0.1
5,154,353	+				+1.5
5,154,387	+				+1.0
5,154,403	+				-2.5
5,154,403	+				+0.6
5,154,403	+				-1.5
5,154,403	+				+0.0
5,154,404	-				-1.8
5,154,404	-				+1.0
5,154,404	-				-1.5
5,154,418	+				-0.7
5,154,418	+				-0.5
5,154,601	+		PP_4538	0.22	-0.2
5,154,601	+		PP_4538	0.22	-1.3
5,154,602	-		PP_4538	0.22	-3.2
5,154,602	-		PP_4538	0.22	-1.4
5,154,602	-		PP_4538	0.22	-3.2
5,154,706	+		PP_4538	0.40	-0.1
5,154,707	-		PP_4538	0.40	-0.6
5,154,707	-		PP_4538	0.40	-0.3
5,154,707	-		PP_4538	0.40	-0.6
5,154,707	-		PP_4538	0.40	-2.5
5,154,707	-		PP_4538	0.40	+1.0
5,154,778	+		PP_4538	0.52	-0.1
5,154,779	-		PP_4538	0.52	+0.3
5,154,801	+		PP_4538	0.56	-1.7
5,154,933	+		PP_4538	0.78	-1.1
5,154,933	+		PP_4538	0.78	-2.3
5,154,934	-		PP_4538	0.78	+0.4
5,154,934	-		PP_4538	0.78	-0.4
5,155,118	+				+0.2
5,155,119	-				-0.2
5,155,119	-				-2.0
5,155,119	-				-0.1
5,155,137	-				-0.2
5,155,257	-		PP_5698	0.25	+0.1
5,155,343	-		PP_5698	0.52	-1.4
5,155,343	-		PP_5698	0.52	-1.7
5,155,343	-		PP_5698	0.52	-0.8
5,155,373	-		PP_5698	0.62	-1.8
5,155,393	+		PP_5698	0.68	-0.4
5,155,393	+		PP_5698	0.68	-0.8
5,155,393	+		PP_5698	0.68	-3.2
5,155,438	+		PP_5698	0.82	-1.5
5,155,471	-				-1.3
5,155,522	+				-0.5
5,155,523	-				-2.6
5,155,559	-				+0.5
5,155,656	+		PP_4539	0.12	-1.0
5,155,656	+		PP_4539	0.12	-0.4
5,155,656	+		PP_4539	0.12	+0.1
5,155,657	-		PP_4539	0.12	+0.6
5,155,998	+		PP_4539	0.49	+0.8
5,155,998	+		PP_4539	0.49	-0.3
5,155,999	-		PP_4539	0.49	+0.5
5,155,999	-		PP_4539	0.49	+0.6
5,155,999	-		PP_4539	0.49	-0.5
5,155,999	-		PP_4539	0.49	-0.3
5,155,999	-		PP_4539	0.49	-0.0
5,155,999	-		PP_4539	0.49	-1.3
5,156,013	+		PP_4539	0.51	+0.8