Strain Fitness in Pseudomonas putida KT2440 around PP_4485

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
5,094,480	+				+2.4
5,094,481	-				+1.7
5,094,481	-				+2.3
5,094,592	+		PP_4484	0.12	+1.6
5,094,592	+		PP_4484	0.12	+2.8
5,094,593	-		PP_4484	0.12	+3.4
5,094,593	-		PP_4484	0.12	+2.8
5,094,593	-		PP_4484	0.12	+1.9
5,094,593	-		PP_4484	0.12	+2.7
5,094,611	+		PP_4484	0.15	+2.7
5,094,611	+		PP_4484	0.15	+2.6
5,094,611	+		PP_4484	0.15	+1.9
5,094,611	+		PP_4484	0.15	+3.0
5,094,611	+		PP_4484	0.15	+2.8
5,094,611	+		PP_4484	0.15	+1.4
5,094,612	-		PP_4484	0.15	+1.9
5,094,613	+		PP_4484	0.15	+2.9
5,094,613	+		PP_4484	0.15	+2.5
5,094,613	+		PP_4484	0.15	+2.0
5,094,614	-		PP_4484	0.15	+1.8
5,094,631	+		PP_4484	0.18	+2.4
5,094,631	+		PP_4484	0.18	+1.7
5,094,631	+		PP_4484	0.18	+2.0
5,094,632	-		PP_4484	0.18	+2.4
5,094,632	-		PP_4484	0.18	+2.2
5,094,634	+		PP_4484	0.18	+2.1
5,094,635	-		PP_4484	0.18	+1.9
5,094,635	-		PP_4484	0.18	+2.8
5,094,734	-		PP_4484	0.32	+3.0
5,094,781	+		PP_4484	0.39	+3.1
5,094,874	+		PP_4484	0.53	+2.0
5,094,874	+		PP_4484	0.53	+2.6
5,094,874	+		PP_4484	0.53	+3.0
5,094,874	+		PP_4484	0.53	+2.8
5,094,884	+		PP_4484	0.54	+2.5
5,094,885	-		PP_4484	0.54	+1.2
5,094,917	+		PP_4484	0.59	+2.3
5,094,917	+		PP_4484	0.59	+1.7
5,094,917	+		PP_4484	0.59	+2.2
5,094,918	-		PP_4484	0.59	+2.5
5,094,918	-		PP_4484	0.59	+2.1
5,094,918	-		PP_4484	0.59	+3.4
5,094,944	+		PP_4484	0.63	+1.5
5,094,944	+		PP_4484	0.63	+3.8
5,094,982	+		PP_4484	0.68	+1.8
5,094,983	-		PP_4484	0.68	+1.9
5,094,983	-		PP_4484	0.68	+1.8
5,095,027	+		PP_4484	0.74	+2.7
5,095,027	+		PP_4484	0.74	+2.1
5,095,027	+		PP_4484	0.74	+2.3
5,095,027	+		PP_4484	0.74	+2.4
5,095,027	+		PP_4484	0.74	+2.1
5,095,028	-		PP_4484	0.75	+2.0
5,095,028	-		PP_4484	0.75	+2.7
5,095,028	-		PP_4484	0.75	+2.8
5,095,028	-		PP_4484	0.75	+2.7
5,095,033	+		PP_4484	0.75	+3.2
5,095,033	+		PP_4484	0.75	+2.6
5,095,033	+		PP_4484	0.75	+1.9
5,095,034	-		PP_4484	0.75	+1.4
5,095,034	-		PP_4484	0.75	+2.4
5,095,034	-		PP_4484	0.75	+2.3
5,095,163	-				+2.5
5,095,193	-				+2.9
5,095,205	+				+2.2
5,095,205	+				+2.0
5,095,206	-				+3.0
5,095,249	-				+1.7
5,095,249	-				+0.9
5,095,249	-				+2.1
5,095,287	+		PP_4485	0.12	+1.7
5,095,287	+		PP_4485	0.12	+2.4
5,095,287	+		PP_4485	0.12	+1.6
5,095,288	-		PP_4485	0.12	+1.9
5,095,500	+		PP_4485	0.43	+2.3
5,095,501	-		PP_4485	0.43	+3.8
5,095,569	+		PP_4485	0.53	+1.6
5,095,627	+		PP_4485	0.62	+2.8
5,095,627	+		PP_4485	0.62	+2.2
5,095,628	-		PP_4485	0.62	+2.3
5,095,628	-		PP_4485	0.62	+2.2
5,095,628	-		PP_4485	0.62	+1.7
5,095,628	-		PP_4485	0.62	+2.9
5,095,629	+		PP_4485	0.62	-0.4
5,095,629	+		PP_4485	0.62	+1.8
5,095,629	+		PP_4485	0.62	+2.0
5,095,629	+		PP_4485	0.62	+2.6
5,095,630	-		PP_4485	0.62	+1.3
5,095,630	-		PP_4485	0.62	+2.0
5,095,630	-		PP_4485	0.62	+1.9
5,095,630	-		PP_4485	0.62	+1.8
5,095,630	-		PP_4485	0.62	+2.5
5,095,683	+		PP_4485	0.70	+2.7
5,095,684	-		PP_4485	0.70	+2.7
5,095,684	-		PP_4485	0.70	+2.1
5,095,718	-		PP_4485	0.75	+1.3
5,095,737	+		PP_4485	0.78	+1.7
5,095,737	+		PP_4485	0.78	+2.1
5,095,841	+				+1.2
5,095,841	+				+2.3
5,095,842	-				+1.7
5,095,908	+				+2.8
5,095,908	+				+1.8
5,095,981	+				+2.6
5,095,981	+				+1.4
5,095,982	-				-0.9
5,095,982	-				-0.9
5,095,999	+				+2.1
5,095,999	+				+2.4
5,095,999	+				+0.9
5,095,999	+				+2.0
5,095,999	+				+2.7
5,096,000	-				+1.2
5,096,000	-				+0.7
5,096,000	-				+1.1
5,096,000	-				+0.5
5,096,000	-				+1.4
5,096,000	-				+0.7
5,096,000	-				+2.2
5,096,018	-				+2.4
5,096,018	-				+1.9
5,096,018	-				+2.2
5,096,109	+		PP_4486	0.16	+2.2
5,096,118	-		PP_4486	0.18	+3.0
5,096,123	+		PP_4486	0.18	+1.6
5,096,163	+		PP_4486	0.23	+1.6
5,096,266	+		PP_4486	0.36	+2.4
5,096,266	+		PP_4486	0.36	+1.6
5,096,267	-		PP_4486	0.37	+1.5
5,096,287	+		PP_4486	0.39	+2.6
5,096,443	+		PP_4486	0.59	+3.0
5,096,444	-		PP_4486	0.59	+1.7
5,096,444	-		PP_4486	0.59	+3.0
5,096,444	-		PP_4486	0.59	+2.7
5,096,444	-		PP_4486	0.59	+1.5
5,096,444	-		PP_4486	0.59	+1.8
5,096,446	+		PP_4486	0.59	+2.7
5,096,570	+		PP_4486	0.75	+2.3
5,096,570	+		PP_4486	0.75	+2.2
5,096,570	+		PP_4486	0.75	+2.3
5,096,570	+		PP_4486	0.75	+2.9
5,096,614	+		PP_4486	0.81	+2.9
5,096,614	+		PP_4486	0.81	+1.4
5,096,665	+		PP_4486	0.87	+2.1
5,096,666	-		PP_4486	0.87	+2.3
5,096,770	+				+1.5
5,096,770	+				+2.7
5,096,770	+				+2.3
5,096,771	-				+1.8
5,096,771	-				+2.1
5,096,792	+				+2.5
5,096,792	+				+2.4
5,096,793	-				-0.3
5,096,793	-				+1.4
5,096,793	-				+1.3
5,096,793	-				+1.4
5,096,804	-				+2.3
5,096,804	-				+1.6
5,096,804	-				+0.7
5,096,829	+				+2.2
5,096,866	+				+2.3
5,096,867	-				+0.5