Strain Fitness in Pseudomonas putida KT2440 around PP_4289

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
4,878,626	+		PP_4287	0.67	+1.0
4,878,626	+		PP_4287	0.67	-0.9
4,878,627	-		PP_4287	0.68	-0.1
4,878,627	-		PP_4287	0.68	+0.2
4,878,628	+		PP_4287	0.68	+0.2
4,878,628	+		PP_4287	0.68	-1.7
4,878,628	+		PP_4287	0.68	+1.1
4,878,628	+		PP_4287	0.68	-1.6
4,878,628	+		PP_4287	0.68	-0.9
4,878,791	+				-0.5
4,878,792	-				-1.4
4,878,792	-				+1.3
4,878,792	-				+0.6
4,878,827	+				-0.2
4,878,828	-				+0.8
4,878,828	-				-0.2
4,878,828	-				+0.3
4,878,828	-				-1.3
4,878,836	+				-1.7
4,878,836	+				+0.1
4,878,837	-				+0.2
4,878,837	-				+0.5
4,878,854	+				+1.0
4,878,855	-				-2.9
4,878,855	-				+1.3
4,879,150	+		PP_4288	0.61	-0.5
4,879,178	+		PP_4288	0.66	-1.6
4,879,179	-		PP_4288	0.67	+0.6
4,879,196	+		PP_4288	0.70	+0.5
4,879,196	+		PP_4288	0.70	+0.8
4,879,200	+		PP_4288	0.71	+1.1
4,879,302	+				+0.3
4,879,302	+				-0.0
4,879,302	+				-1.6
4,879,302	+				-1.5
4,879,302	+				+1.0
4,879,303	-				+0.8
4,879,303	-				-0.2
4,879,303	-				+0.8
4,879,303	-				+0.9
4,879,303	-				-0.3
4,879,303	-				-0.1
4,879,345	-				+0.8
4,879,383	+				+1.1
4,879,383	+				+0.1
4,879,383	+				+0.4
4,879,383	+				+0.3
4,879,384	-				-0.4
4,879,384	-				-0.2
4,879,384	-				+0.7
4,879,384	-				-0.6
4,879,384	-				-0.0
4,879,384	-				+1.9
4,879,384	-				-0.4
4,879,384	-				+0.9
4,879,384	-				-1.9
4,879,384	-				-0.6
4,879,387	+				+0.1
4,879,387	+				-0.1
4,879,387	+				+1.8
4,879,387	+				-0.1
4,879,387	+				-0.0
4,879,387	+				+0.2
4,879,387	+				-0.6
4,879,387	+				+0.3
4,879,387	+				+0.1
4,879,387	+				+0.9
4,879,387	+				+0.4
4,879,387	+				-0.9
4,879,387	+				+0.3
4,879,388	-				+0.6
4,879,388	-				+1.0
4,879,388	-				+1.1
4,879,388	-				-0.5
4,879,388	-				+0.5
4,879,388	-				+1.4
4,879,388	-				+0.0
4,879,388	-				-0.6
4,879,388	-				-0.9
4,879,388	-				-0.0
4,879,388	-				+0.4
4,879,388	-				-0.2
4,879,388	-				+0.8
4,879,478	+				-0.8
4,879,479	-				-1.1
4,879,564	+		PP_4289	0.13	+0.6
4,879,564	+		PP_4289	0.13	+0.6
4,879,564	+		PP_4289	0.13	+1.8
4,879,564	+		PP_4289	0.13	+1.2
4,879,565	-		PP_4289	0.13	+1.8
4,879,565	-		PP_4289	0.13	-0.4
4,879,568	+		PP_4289	0.13	+0.2
4,879,569	-		PP_4289	0.13	+1.0
4,879,583	+		PP_4289	0.14	-0.7
4,879,640	+		PP_4289	0.19	+0.7
4,879,640	+		PP_4289	0.19	+2.1
4,879,640	+		PP_4289	0.19	+0.1
4,879,640	+		PP_4289	0.19	+0.2
4,879,640	+		PP_4289	0.19	-0.3
4,879,641	-		PP_4289	0.19	+2.0
4,879,641	-		PP_4289	0.19	+1.6
4,879,641	-		PP_4289	0.19	+1.5
4,879,686	-		PP_4289	0.22	+0.4
4,879,703	+		PP_4289	0.23	+0.2
4,879,787	+		PP_4289	0.30	-0.3
4,879,787	+		PP_4289	0.30	+0.7
4,879,788	-		PP_4289	0.30	-0.4
4,879,788	-		PP_4289	0.30	+1.3
4,880,066	+		PP_4289	0.50	+0.3
4,880,067	-		PP_4289	0.50	+0.8
4,880,067	-		PP_4289	0.50	+0.6
4,880,120	+		PP_4289	0.54	+0.6
4,880,121	-		PP_4289	0.54	+1.2
4,880,132	+		PP_4289	0.55	+0.8
4,880,133	-		PP_4289	0.55	+1.3
4,880,133	-		PP_4289	0.55	+0.9
4,880,187	-		PP_4289	0.59	+0.7
4,880,217	-		PP_4289	0.62	-0.9
4,880,217	-		PP_4289	0.62	-0.0
4,880,217	-		PP_4289	0.62	-2.4
4,880,270	-		PP_4289	0.66	-0.4
4,880,293	-		PP_4289	0.67	+0.8
4,880,324	+		PP_4289	0.70	+1.2
4,880,836	+				-0.9
4,880,836	+				-1.1
4,880,939	+				-1.9
4,880,939	+				-0.1
4,880,939	+				+0.8
4,880,939	+				+0.3
4,880,939	+				+0.5
4,880,939	+				-0.6
4,880,940	-				+1.0
4,880,940	-				-0.0
4,880,942	-				+0.7
4,880,942	-				+0.6
4,881,020	+				+0.8
4,881,020	+				-0.2
4,881,020	+				+0.5
4,881,021	-				-0.7
4,881,021	-				-1.4
4,881,021	-				+1.0
4,881,021	-				-1.3
4,881,443	+		PP_4290	0.39	-0.9
4,881,444	-		PP_4290	0.39	-0.1
4,881,444	-		PP_4290	0.39	+0.2
4,881,548	+		PP_4290	0.46	-0.4
4,881,548	+		PP_4290	0.46	-3.0
4,881,548	+		PP_4290	0.46	+0.5
4,881,548	+		PP_4290	0.46	+0.3
4,881,548	+		PP_4290	0.46	-1.5
4,881,681	+		PP_4290	0.56	-0.5