Strain Fitness in Pseudomonas putida KT2440 around PP_4130

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
4,667,192	+		PP_4129	0.52	+3.4
4,667,193	-		PP_4129	0.52	+2.9
4,667,422	-				+1.7
4,667,422	-		PP_4129	0.64	+1.8
4,667,486	+		PP_4129	0.67	+3.0
4,667,486	+		PP_4129	0.67	+2.7
4,667,487	-		PP_4129	0.68	+3.6
4,667,522	+		PP_4129	0.69	+2.5
4,667,523	-		PP_4129	0.69	+2.1
4,667,901	-				+0.9
4,668,023	+				+2.9
4,668,024	-				+1.3
4,668,085	-				+2.6
4,668,085	-				+3.3
4,668,085	-				+2.6
4,668,091	-				+1.8
4,668,091	-				+1.5
4,668,091	-				+3.0
4,668,230	+				+0.2
4,668,231	-				+3.2
4,668,231	-				+1.7
4,668,282	+				+0.6
4,668,331	-		PP_4130	0.13	+0.7
4,668,436	+		PP_4130	0.20	+2.6
4,668,582	+				+3.2
4,668,583	-		PP_4130	0.30	+0.7
4,668,640	-		PP_4130	0.33	+2.0
4,668,724	-		PP_4130	0.39	+3.5
4,668,724	-		PP_4130	0.39	+2.2
4,668,795	+		PP_4130	0.43	-0.1
4,668,795	+		PP_4130	0.43	+2.7
4,668,796	-		PP_4130	0.44	+3.4
4,668,917	+		PP_4130	0.51	+3.7
4,668,918	-		PP_4130	0.51	+1.0
4,669,032	+		PP_4130	0.59	+1.6
4,669,033	-		PP_4130	0.59	+2.0
4,669,125	+		PP_4130	0.65	+3.3
4,669,221	+		PP_4130	0.71	+2.8
4,669,387	+		PP_4130	0.82	+2.2
4,669,464	+		PP_4130	0.87	+2.2
4,669,465	-		PP_4130	0.87	-0.3
4,669,544	-				+1.4
4,669,567	-				+2.3
4,669,659	+				-0.8
4,669,895	-		PP_4131	0.15	+2.3
4,669,948	+		PP_4131	0.19	+2.9
4,669,948	+		PP_4131	0.19	+2.0
4,669,948	+		PP_4131	0.19	+3.2
4,669,996	+				+1.9
4,669,996	+		PP_4131	0.22	+1.9
4,669,996	+		PP_4131	0.22	+0.5
4,670,098	+		PP_4131	0.29	+3.0
4,670,113	+		PP_4131	0.30	+3.6
4,670,114	-		PP_4131	0.30	+0.9
4,670,156	-		PP_4131	0.33	+1.6
4,670,156	-		PP_4131	0.33	+1.7
4,670,212	+		PP_4131	0.37	+3.0
4,670,213	-		PP_4131	0.37	+1.6
4,670,371	+		PP_4131	0.48	+0.0
4,670,372	-		PP_4131	0.48	+4.1
4,670,429	+		PP_4131	0.52	+4.1
4,670,430	-		PP_4131	0.52	+2.2
4,670,430	-		PP_4131	0.52	+0.9
4,670,445	-		PP_4131	0.53	+4.8
4,670,495	+		PP_4131	0.56	+2.7
4,670,495	+		PP_4131	0.56	+2.0
4,670,496	-		PP_4131	0.56	+2.0
4,670,496	-		PP_4131	0.56	+0.7
4,670,496	-		PP_4131	0.56	+4.6
4,670,578	+		PP_4131	0.62	+2.3
4,670,579	-		PP_4131	0.62	+2.8