Strain Fitness in Pseudomonas putida KT2440 around PP_4051

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
4,565,352	-		PP_4050	0.38	-2.6
4,565,385	+		PP_4050	0.40	-1.0
4,565,397	+		PP_4050	0.41	-1.9
4,565,397	+		PP_4050	0.41	-0.4
4,565,535	+				+0.3
4,565,535	+		PP_4050	0.50	-3.6
4,565,536	-		PP_4050	0.50	-1.2
4,565,536	-		PP_4050	0.50	-1.1
4,565,536	-		PP_4050	0.50	-0.8
4,565,714	+		PP_4050	0.61	-0.7
4,565,832	+		PP_4050	0.69	-0.4
4,565,832	+		PP_4050	0.69	-1.4
4,565,833	-		PP_4050	0.69	-4.3
4,565,833	-		PP_4050	0.69	-2.8
4,566,039	+		PP_4050	0.82	-4.2
4,566,040	-		PP_4050	0.82	-2.2
4,566,074	+		PP_4050	0.84	-1.1
4,566,075	-		PP_4050	0.84	-1.9
4,566,075	-		PP_4050	0.84	-1.1
4,566,075	-		PP_4050	0.84	-2.9
4,566,075	-		PP_4050	0.84	-1.8
4,566,075	-		PP_4050	0.84	-1.4
4,566,151	-		PP_4050	0.89	-1.9
4,566,151	-		PP_4050	0.89	-0.8
4,566,177	+				-0.3
4,566,178	-				-3.8
4,566,178	-				-1.1
4,566,184	-				-0.8
4,566,264	+				-1.2
4,566,265	-				-2.3
4,566,277	-				-1.8
4,566,313	-				-1.0
4,566,503	+				-0.3
4,566,509	+		PP_4051	0.10	-0.3
4,566,588	+		PP_4051	0.15	-0.4
4,566,593	+		PP_4051	0.15	-1.3
4,566,788	+		PP_4051	0.26	+0.0
4,566,788	+		PP_4051	0.26	-1.3
4,566,798	+		PP_4051	0.27	-1.8
4,566,806	+		PP_4051	0.27	+1.0
4,566,824	+		PP_4051	0.28	-1.5
4,566,902	+		PP_4051	0.33	-0.2
4,566,929	+		PP_4051	0.34	+0.3
4,567,023	-		PP_4051	0.40	-0.1
4,567,221	-		PP_4051	0.51	-0.8
4,567,289	+		PP_4051	0.55	-0.1
4,567,289	+		PP_4051	0.55	-0.3
4,567,290	-		PP_4051	0.55	-1.3
4,567,292	+		PP_4051	0.55	+0.1
4,567,292	+		PP_4051	0.55	+0.0
4,567,292	+		PP_4051	0.55	-0.9
4,567,293	-		PP_4051	0.55	-0.3
4,567,293	-		PP_4051	0.55	+0.2
4,568,027	+				+1.4
4,568,028	-				+0.7
4,568,294	+		PP_4052	0.11	-1.9
4,568,321	-		PP_4052	0.12	+0.4
4,568,548	+		PP_4052	0.23	-1.7
4,568,548	+		PP_4052	0.23	-2.0
4,568,549	-		PP_4052	0.23	+0.2
4,568,646	+		PP_4052	0.28	+0.1
4,568,689	+		PP_4052	0.30	+0.2
4,568,689	+		PP_4052	0.30	-1.2
4,568,689	+		PP_4052	0.30	-0.3
4,568,689	+		PP_4052	0.30	-0.1
4,568,689	+		PP_4052	0.30	+0.1
4,568,689	+		PP_4052	0.30	+0.5
4,568,690	-		PP_4052	0.30	-1.4
4,568,690	-		PP_4052	0.30	+0.2
4,568,690	-		PP_4052	0.30	+0.1
4,568,690	-		PP_4052	0.30	+0.1
4,568,690	-		PP_4052	0.30	+0.0
4,568,690	-		PP_4052	0.30	-1.8
4,568,699	-		PP_4052	0.30	-1.3
4,568,734	+		PP_4052	0.32	-0.2
4,568,735	-		PP_4052	0.32	-1.0
4,568,735	-		PP_4052	0.32	-0.6
4,568,735	-		PP_4052	0.32	+1.1
4,568,735	-		PP_4052	0.32	-0.4
4,568,735	-		PP_4052	0.32	-1.0
4,568,736	+		PP_4052	0.32	-1.3
4,569,061	+		PP_4052	0.48	-0.6