Strain Fitness in Pseudomonas putida KT2440 around PP_3597

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
4,085,625	+		PP_3596	0.26	-1.6
4,085,626	-		PP_3596	0.26	-1.0
4,086,130	+		PP_3596	0.67	-1.3
4,086,131	-		PP_3596	0.67	-0.7
4,086,131	-		PP_3596	0.67	+1.2
4,086,187	+		PP_3596	0.71	-0.8
4,086,188	-		PP_3596	0.71	-1.3
4,086,191	+		PP_3596	0.71	-2.0
4,086,191	+				-0.6
4,086,191	+		PP_3596	0.71	-3.4
4,086,191	+		PP_3596	0.71	-0.4
4,086,191	+		PP_3596	0.71	-1.4
4,086,192	-		PP_3596	0.71	-0.1
4,086,656	+		PP_3597	0.11	-1.7
4,086,657	-		PP_3597	0.11	-0.4
4,086,657	-		PP_3597	0.11	-1.2
4,086,804	+		PP_3597	0.30	-1.4
4,086,850	-		PP_3597	0.36	-2.3
4,086,850	-		PP_3597	0.36	-0.6
4,087,023	-		PP_3597	0.58	-1.3
4,087,461	-				+1.4
4,087,461	-				+0.3
4,087,470	+				+0.4
4,087,474	+				+1.0
4,087,475	-				-2.8
4,087,511	+				-0.1
4,087,516	-				-0.0
4,087,590	-				-0.2
4,087,590	-				-2.7
4,087,626	+				+2.4
4,087,626	+				+2.1
4,087,647	+				+1.8
4,087,648	-				-1.0
4,087,651	+				+1.0
4,087,651	+				+0.9
4,087,704	-				-2.2
4,087,776	+				-0.7
4,087,776	+				+0.0
4,087,776	+				-0.5
4,087,776	+				-0.4
4,087,776	+				-2.2
4,087,776	+				-1.4
4,087,777	-				-0.2
4,087,777	-				-0.0
4,087,777	-				-1.3
4,087,777	-				-0.1
4,087,777	-				+0.8
4,087,777	-				-0.8
4,087,870	+		PP_3598	0.11	+0.1
4,087,870	+		PP_3598	0.11	-0.3
4,087,871	-		PP_3598	0.12	-0.6
4,087,891	+		PP_3598	0.14	+0.2
4,087,891	+		PP_3598	0.14	-1.6
4,087,891	+		PP_3598	0.14	-0.3
4,087,892	-		PP_3598	0.14	-0.4
4,087,892	-		PP_3598	0.14	-0.3
4,087,892	-		PP_3598	0.14	-0.3
4,087,892	-		PP_3598	0.14	-0.9
4,087,892	-		PP_3598	0.14	-0.6
4,087,892	-		PP_3598	0.14	+1.1
4,087,897	-		PP_3598	0.15	-1.5
4,087,941	+		PP_3598	0.20	-0.7
4,087,941	+		PP_3598	0.20	-0.5
4,087,996	+		PP_3598	0.27	-0.8
4,088,035	+		PP_3598	0.32	+0.4
4,088,035	+		PP_3598	0.32	-2.8
4,088,192	-		PP_3598	0.51	+1.1
4,088,203	+		PP_3598	0.53	-0.3
4,088,204	-		PP_3598	0.53	+0.7
4,088,263	+		PP_3598	0.60	-0.4
4,088,264	-		PP_3598	0.60	+0.4