Strain Fitness in Pseudomonas putida KT2440 around PP_3578

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
4,058,702	-				-0.2
4,058,716	+				-0.2
4,058,717	-				+0.5
4,058,717	-				+0.2
4,058,717	-				+1.3
4,058,717	-				+0.1
4,058,926	+		PP_3577	0.50	+0.6
4,058,926	+		PP_3577	0.50	+0.4
4,058,926	+		PP_3577	0.50	+0.9
4,058,926	+		PP_3577	0.50	+0.6
4,058,927	-		PP_3577	0.50	-0.3
4,058,942	+		PP_3577	0.53	-0.4
4,058,942	+		PP_3577	0.53	-0.4
4,058,943	-		PP_3577	0.53	-0.8
4,058,992	+		PP_3577	0.63	+1.5
4,059,009	+		PP_3577	0.66	+0.2
4,059,054	-		PP_3577	0.75	-0.6
4,059,092	+		PP_3577	0.82	+0.4
4,059,093	-		PP_3577	0.82	+0.3
4,059,093	-		PP_3577	0.82	+0.3
4,059,137	-				+0.1
4,059,352	+				-3.5
4,059,352	+				-1.1
4,059,353	-				-2.7
4,059,353	-				-0.0
4,059,410	+				-0.4
4,059,410	+				+0.6
4,059,410	+				+0.1
4,059,411	-				-0.9
4,059,598	+		PP_3578	0.21	+0.7
4,059,599	-		PP_3578	0.21	+0.5
4,059,599	-		PP_3578	0.21	-0.3
4,059,796	+		PP_3578	0.33	-0.8
4,059,796	+		PP_3578	0.33	+0.7
4,059,796	+		PP_3578	0.33	-1.1
4,059,797	-		PP_3578	0.33	-1.6
4,059,797	-		PP_3578	0.33	-2.0
4,059,904	+		PP_3578	0.39	-1.4
4,059,904	+		PP_3578	0.39	-1.6
4,059,905	-		PP_3578	0.39	-2.4
4,059,925	+		PP_3578	0.41	-0.4
4,059,925	+				+0.2
4,059,926	-		PP_3578	0.41	+0.7
4,060,023	+		PP_3578	0.47	+0.2
4,060,023	+		PP_3578	0.47	-0.8
4,060,145	-		PP_3578	0.54	-1.5
4,060,169	-		PP_3578	0.55	-0.1
4,060,169	-		PP_3578	0.55	-1.6
4,060,173	+		PP_3578	0.56	-0.6
4,060,174	-		PP_3578	0.56	-1.9
4,060,264	+		PP_3578	0.61	-0.5
4,060,265	-		PP_3578	0.61	+1.5
4,060,265	-		PP_3578	0.61	-3.6
4,060,265	-		PP_3578	0.61	-1.8
4,060,347	-		PP_3578	0.66	+0.0
4,060,475	+		PP_3578	0.74	-1.3
4,060,549	+		PP_3578	0.79	-1.9
4,060,550	-		PP_3578	0.79	-0.1
4,060,799	+				-0.8
4,060,945	+				+0.6
4,060,945	+				-3.3
4,061,004	+				+0.9
4,061,004	+				-0.3
4,061,005	-				-0.1
4,061,027	-				+0.7
4,061,041	+				+0.2
4,061,041	+				+0.6
4,061,041	+				+0.2
4,061,042	-				-0.1
4,061,042	-				+0.3
4,061,165	-		PP_3579	0.14	+0.9
4,061,210	+		PP_3579	0.21	-0.0
4,061,211	-		PP_3579	0.21	+0.7
4,061,228	+		PP_3579	0.24	-0.2
4,061,403	-		PP_3579	0.51	+0.2
4,061,408	+		PP_3579	0.52	-0.9
4,061,409	-		PP_3579	0.52	-1.5
4,061,409	-		PP_3579	0.52	-1.2
4,061,454	+		PP_3579	0.59	-0.7
4,061,469	-		PP_3579	0.61	-0.8
4,061,690	-				+0.3
4,061,690	-				-0.5
4,061,690	-				+0.1
4,061,717	+				-0.1
4,061,717	+				-0.0
4,061,783	+				-0.4
4,061,783	+				-0.4
4,061,886	+				+1.1