Strain Fitness in Pseudomonas putida KT2440 around PP_3557

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
4,034,003	+		PP_3556	0.47	+0.1
4,034,003	+		PP_3556	0.47	+0.8
4,034,004	-		PP_3556	0.47	+0.6
4,034,048	+		PP_3556	0.50	+0.1
4,034,048	+		PP_3556	0.50	-1.0
4,034,049	-		PP_3556	0.50	+0.7
4,034,049	-		PP_3556	0.50	-0.4
4,034,231	+				+0.7
4,034,231	+		PP_3556	0.64	-0.3
4,034,231	+		PP_3556	0.64	-0.3
4,034,232	-		PP_3556	0.64	-0.9
4,034,232	-		PP_3556	0.64	+0.2
4,034,283	+		PP_3556	0.68	-1.2
4,034,304	-		PP_3556	0.70	+1.0
4,034,317	+		PP_3556	0.71	+0.1
4,034,318	-		PP_3556	0.71	+0.8
4,034,522	+		PP_3556	0.86	+0.4
4,034,522	+		PP_3556	0.86	+0.3
4,034,522	+		PP_3556	0.86	-0.7
4,034,523	-		PP_3556	0.86	+0.2
4,034,523	-		PP_3556	0.86	+0.8
4,034,523	-		PP_3556	0.86	-0.3
4,034,666	-				+1.3
4,034,713	-				-0.0
4,034,713	-				-0.5
4,034,910	+				-0.0
4,034,911	-				+0.9
4,034,911	-				+0.5
4,034,925	+				+1.8
4,035,178	+		PP_3557	0.11	-3.2
4,035,178	+		PP_3557	0.11	-2.1
4,035,421	+		PP_3557	0.22	-0.5
4,035,531	-		PP_3557	0.27	-1.3
4,035,564	-		PP_3557	0.29	+0.2
4,035,564	-		PP_3557	0.29	-0.4
4,035,571	+		PP_3557	0.29	-0.9
4,035,571	+		PP_3557	0.29	-1.2
4,035,571	+		PP_3557	0.29	+0.2
4,035,571	+		PP_3557	0.29	-0.9
4,035,572	-		PP_3557	0.29	+0.4
4,035,577	+		PP_3557	0.29	-1.4
4,035,577	+		PP_3557	0.29	-1.0
4,035,584	+		PP_3557	0.30	-1.4
4,035,679	-		PP_3557	0.34	+0.1
4,035,719	-		PP_3557	0.36	+0.2
4,035,816	-		PP_3557	0.40	-0.2
4,036,017	+		PP_3557	0.50	-0.5
4,036,018	-		PP_3557	0.50	+0.6
4,036,351	+		PP_3557	0.65	+0.4
4,036,371	-		PP_3557	0.66	-1.0
4,036,550	+		PP_3557	0.75	-0.4
4,036,550	+		PP_3557	0.75	-2.2
4,037,145	+				+1.0
4,037,146	-				+0.6
4,037,186	+				+0.1
4,037,281	+				+0.3
4,037,512	+		PP_3558	0.32	+2.1
4,037,552	+		PP_3558	0.36	+0.9
4,037,552	+		PP_3558	0.36	-0.3
4,037,552	+		PP_3558	0.36	-0.2
4,037,552	+		PP_3558	0.36	-0.4
4,037,736	-		PP_3558	0.54	+1.2
4,037,753	+		PP_3558	0.55	-0.4
4,037,754	-		PP_3558	0.56	+1.4
4,037,754	-		PP_3558	0.56	-0.3
4,037,754	-		PP_3558	0.56	-0.1
4,037,754	-		PP_3558	0.56	-0.6
4,037,754	-		PP_3558	0.56	-0.6
4,037,838	-		PP_3558	0.64	-0.8
4,037,838	-		PP_3558	0.64	+0.4
4,037,838	-		PP_3558	0.64	+0.4
4,037,870	+		PP_3558	0.67	+0.7
4,038,014	+		PP_3558	0.81	+2.1
4,038,015	-		PP_3558	0.81	-0.2
4,038,045	+		PP_3558	0.84	-0.2
4,038,046	-		PP_3558	0.84	-0.4