Strain Fitness in Pseudomonas putida KT2440 around PP_3282

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,715,457	-		PP_3280	0.67	-0.4
3,715,599	-		PP_3280	0.79	-0.2
3,715,684	+		PP_3280	0.86	+0.2
3,715,684	+		PP_3280	0.86	-0.6
3,715,684	+		PP_3280	0.86	-0.2
3,715,685	-		PP_3280	0.86	+0.6
3,715,895	-		PP_3281	0.11	+1.1
3,715,954	+		PP_3281	0.24	+0.1
3,715,955	-		PP_3281	0.24	-0.6
3,715,955	-		PP_3281	0.24	+0.0
3,716,032	+		PP_3281	0.42	-1.0
3,716,033	-		PP_3281	0.42	+0.5
3,716,072	-		PP_3281	0.51	-0.8
3,716,072	-		PP_3281	0.51	+0.6
3,716,075	+		PP_3281	0.51	+0.7
3,716,075	+		PP_3281	0.51	-0.6
3,716,075	+		PP_3281	0.51	-1.2
3,716,076	-		PP_3281	0.52	-0.4
3,716,164	-		PP_3281	0.72	-0.6
3,716,290	+				-0.7
3,716,290	+				-0.3
3,716,291	-				+0.3
3,716,291	-				+1.1
3,716,291	-				+0.1
3,716,291	-				+1.4
3,716,436	-		PP_3282	0.10	-0.9
3,716,673	-		PP_3282	0.26	-1.6
3,716,940	-		PP_3282	0.43	-0.4
3,716,945	+		PP_3282	0.44	-0.1
3,716,945	+		PP_3282	0.44	+1.2
3,716,946	-		PP_3282	0.44	-0.6
3,716,946	-		PP_3282	0.44	-1.6
3,716,946	-		PP_3282	0.44	-1.3
3,717,047	-		PP_3282	0.50	-1.1
3,717,065	+		PP_3282	0.52	-0.9
3,717,065	+		PP_3282	0.52	+0.6
3,717,065	+		PP_3282	0.52	-1.2
3,717,065	+		PP_3282	0.52	-0.1
3,717,065	+		PP_3282	0.52	+0.3
3,717,066	-		PP_3282	0.52	-0.9
3,717,066	-		PP_3282	0.52	-0.1
3,717,066	-		PP_3282	0.52	+1.0
3,717,066	-		PP_3282	0.52	-0.6
3,717,184	+		PP_3282	0.59	+0.1
3,717,185	-		PP_3282	0.60	-1.1
3,717,198	-		PP_3282	0.60	-0.5
3,717,198	-				-0.0
3,717,238	-		PP_3282	0.63	+0.4
3,717,284	+		PP_3282	0.66	-0.9
3,717,285	-		PP_3282	0.66	-0.5
3,717,285	-		PP_3282	0.66	-0.1
3,717,372	+		PP_3282	0.72	-0.3
3,717,435	+		PP_3282	0.76	+0.4
3,717,435	+		PP_3282	0.76	-0.0
3,717,436	-		PP_3282	0.76	+0.5
3,717,451	-		PP_3282	0.77	-1.9
3,717,451	-		PP_3282	0.77	-1.1
3,717,451	-		PP_3282	0.77	+1.0
3,717,451	-		PP_3282	0.77	-1.9
3,717,610	+		PP_3282	0.88	-0.4
3,717,692	+				+1.1
3,717,970	+		PP_3283	0.21	-0.9
3,717,971	-		PP_3283	0.21	-0.4
3,717,971	-		PP_3283	0.21	-0.3
3,718,148	+		PP_3283	0.44	+0.1
3,718,148	+		PP_3283	0.44	-1.8
3,718,281	+		PP_3283	0.61	+0.6
3,718,281	+		PP_3283	0.61	+0.9
3,718,281	+		PP_3283	0.61	-0.2
3,718,327	+		PP_3283	0.66	-0.9
3,718,328	-		PP_3283	0.67	+1.5
3,718,506	-		PP_3283	0.89	+1.0
3,718,506	-		PP_3283	0.89	+0.3