Strain Fitness in Pseudomonas putida KT2440 around PP_3147

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
3,562,847	-		PP_3146	0.25	-2.7
3,562,871	+		PP_3146	0.26	-0.9
3,562,872	-		PP_3146	0.27	+0.5
3,562,955	+		PP_3146	0.33	+0.3
3,562,955	+		PP_3146	0.33	+0.0
3,562,956	-		PP_3146	0.33	-0.6
3,562,956	-		PP_3146	0.33	-2.6
3,563,048	+		PP_3146	0.40	-2.0
3,563,048	+		PP_3146	0.40	-0.7
3,563,048	+		PP_3146	0.40	-0.8
3,563,049	-		PP_3146	0.40	-0.7
3,563,049	-		PP_3146	0.40	-0.4
3,563,049	-		PP_3146	0.40	+1.2
3,563,066	-		PP_3146	0.42	-0.3
3,563,531	+		PP_3146	0.77	-0.1
3,563,691	+		PP_3146	0.90	-1.7
3,563,692	-		PP_3146	0.90	-1.3
3,563,725	+				+1.1
3,563,725	+				+0.0
3,563,726	-				+0.4
3,563,789	+				-0.1
3,563,790	-				-0.8
3,563,792	+				+1.4
3,563,793	-				+0.6
3,563,793	-				+1.5
3,563,793	-				-1.1
3,563,793	-				+1.0
3,563,793	-				+0.0
3,563,913	+				-1.3
3,563,913	+				-0.1
3,563,913	+				-1.3
3,563,943	+				-0.5
3,563,944	-				+0.7
3,563,944	-				+0.3
3,563,944	-				-0.3
3,563,979	+		PP_3147	0.13	+0.3
3,563,979	+		PP_3147	0.13	+0.3
3,564,009	+		PP_3147	0.16	+0.3
3,564,010	-		PP_3147	0.16	+0.8
3,564,057	+		PP_3147	0.20	+0.5
3,564,153	+		PP_3147	0.29	-0.7
3,564,154	-		PP_3147	0.29	+0.6
3,564,154	-		PP_3147	0.29	-0.3
3,564,182	+		PP_3147	0.32	-0.1
3,564,182	+		PP_3147	0.32	-0.6
3,564,265	-		PP_3147	0.39	+0.3
3,564,283	-		PP_3147	0.41	-1.1
3,564,330	+		PP_3147	0.45	-0.6
3,564,369	+		PP_3147	0.49	+0.2
3,564,370	-		PP_3147	0.49	+0.4
3,564,370	-		PP_3147	0.49	+0.4
3,564,519	+				-1.0
3,564,547	-		PP_3147	0.65	-0.7
3,564,547	-		PP_3147	0.65	-0.5
3,564,558	+		PP_3147	0.66	-0.9
3,564,558	+		PP_3147	0.66	-1.2
3,564,558	+		PP_3147	0.66	+0.4
3,564,708	+		PP_3147	0.80	-0.4
3,564,708	+		PP_3147	0.80	+0.2
3,564,768	+		PP_3147	0.85	+1.0
3,564,768	+		PP_3147	0.85	-0.8
3,564,825	+				+0.4
3,564,826	-				+0.6
3,564,826	-				+0.7
3,564,840	+				-0.2
3,564,841	-				+0.5
3,565,058	+				-0.5
3,565,058	+				+0.9
3,565,058	+				-0.4
3,565,091	+				+0.8
3,565,092	-				+0.9
3,565,092	-				+0.3
3,565,119	-				-0.4
3,565,119	-				+0.0
3,565,199	+		PP_3148	0.14	-1.8
3,565,199	+		PP_3148	0.14	-0.3
3,565,199	+		PP_3148	0.14	+0.2
3,565,200	-		PP_3148	0.14	+0.3
3,565,286	+		PP_3148	0.21	+0.2
3,565,475	+		PP_3148	0.35	+0.4
3,565,475	+		PP_3148	0.35	+0.0
3,565,476	-		PP_3148	0.35	+0.3
3,565,476	-		PP_3148	0.35	+0.9
3,565,476	-		PP_3148	0.35	+0.2
3,565,764	+		PP_3148	0.56	+0.3
3,565,764	+		PP_3148	0.56	+1.0
3,565,799	+		PP_3148	0.58	-0.5
3,565,799	+		PP_3148	0.58	+1.1
3,565,799	+		PP_3148	0.58	+0.7