Strain Fitness in Pseudomonas putida KT2440 around PP_2569

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,935,185	+				-0.8
2,935,186	-				+0.3
2,935,208	+				-0.4
2,935,242	+				-0.6
2,935,243	-				+0.7
2,935,243	-				+0.3
2,935,257	-				-0.4
2,935,643	+		PP_2568	0.85	-1.6
2,935,824	+				+0.0
2,935,825	-				-0.5
2,936,064	+				-0.1
2,936,064	+				-0.0
2,936,064	+				+0.4
2,936,065	-				+0.5
2,936,075	+				+1.2
2,936,075	+				+0.6
2,936,076	-				+0.5
2,936,085	-				+1.3
2,936,085	-				+0.5
2,936,249	+		PP_2569	0.17	+1.2
2,936,250	-		PP_2569	0.17	-0.4
2,936,250	-		PP_2569	0.17	-0.6
2,936,250	-		PP_2569	0.17	-0.8
2,936,250	-				-0.0
2,936,393	+		PP_2569	0.25	+0.5
2,936,411	+		PP_2569	0.26	+1.4
2,936,411	+		PP_2569	0.26	-1.5
2,936,411	+		PP_2569	0.26	-1.5
2,936,412	-		PP_2569	0.27	+0.5
2,936,606	+		PP_2569	0.38	+0.2
2,936,607	-		PP_2569	0.38	-0.0
2,936,783	+		PP_2569	0.49	+0.8
2,936,783	+		PP_2569	0.49	-1.4
2,937,003	+		PP_2569	0.62	-1.0
2,937,004	-		PP_2569	0.62	+1.4
2,937,004	-		PP_2569	0.62	+0.2
2,937,146	+		PP_2569	0.70	-1.3
2,937,146	+		PP_2569	0.70	+1.3
2,937,146	+		PP_2569	0.70	+0.3
2,937,377	+		PP_2569	0.84	+0.4
2,937,377	+		PP_2569	0.84	-0.7
2,937,377	+		PP_2569	0.84	-1.3
2,937,378	-		PP_2569	0.84	+0.5
2,937,378	-		PP_2569	0.84	-1.2
2,937,378	-		PP_2569	0.84	+1.1
2,937,464	+		PP_2569	0.89	+0.9
2,937,539	-				-0.2
2,937,542	+				+1.0
2,937,542	+				-1.2
2,937,542	+				+0.6
2,937,542	+				+0.8
2,937,542	+				+0.7
2,937,542	+				+0.1
2,937,543	-				-0.1
2,937,543	-				+0.3
2,937,543	-				-1.2