Strain Fitness in Pseudomonas putida KT2440 around PP_2514

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,860,467	+				+0.5
2,860,468	-				+0.9
2,860,898	+		PP_2513	0.60	-0.6
2,860,898	+		PP_2513	0.60	-0.9
2,860,899	-		PP_2513	0.60	-0.8
2,861,060	+		PP_2513	0.75	-2.5
2,861,061	-		PP_2513	0.75	+0.6
2,861,102	+		PP_2513	0.79	+0.5
2,861,102	+		PP_2513	0.79	-0.0
2,861,314	+				-0.0
2,861,365	+				-0.1
2,861,366	-				-1.3
2,861,404	+				-1.6
2,861,404	+				+1.0
2,861,404	+				-0.7
2,861,405	-				-0.9
2,861,405	-				-1.2
2,861,618	+		PP_2514	0.40	-0.7
2,861,619	-		PP_2514	0.40	-1.1
2,861,619	-		PP_2514	0.40	-0.1
2,861,793	+		PP_2514	0.64	-0.9
2,861,794	-		PP_2514	0.64	+0.4
2,861,794	-		PP_2514	0.64	-1.1
2,861,916	-		PP_2514	0.81	-0.3
2,862,008	+				-0.2
2,862,008	+				-2.2
2,862,011	+				+0.3
2,862,011	+				+0.4
2,862,012	-				-2.3
2,862,012	-				+0.7
2,862,012	-				-0.5
2,862,012	-				+1.0
2,862,134	-		PP_2515	0.11	-0.6
2,862,165	-		PP_2515	0.15	+0.5
2,862,174	+		PP_2515	0.16	+0.8
2,862,174	+		PP_2515	0.16	+0.3
2,862,174	+		PP_2515	0.16	-0.1
2,862,174	+		PP_2515	0.16	+0.9
2,862,174	+		PP_2515	0.16	+0.1
2,862,175	-		PP_2515	0.16	+0.9
2,862,175	-		PP_2515	0.16	-0.9
2,862,175	-		PP_2515	0.16	-0.4
2,862,177	+		PP_2515	0.17	+0.3
2,862,177	+		PP_2515	0.17	-0.7
2,862,178	-		PP_2515	0.17	-0.3
2,862,178	-		PP_2515	0.17	+0.5
2,862,222	+		PP_2515	0.23	-0.1
2,862,223	-		PP_2515	0.23	-0.2
2,862,244	+		PP_2515	0.25	-0.1
2,862,244	+		PP_2515	0.25	+0.4
2,862,245	-		PP_2515	0.25	+0.4
2,862,306	+		PP_2515	0.33	-0.1
2,862,346	-		PP_2515	0.38	-2.3
2,862,364	+		PP_2515	0.41	+0.9
2,862,409	-		PP_2515	0.47	+0.7
2,862,409	-		PP_2515	0.47	-1.8
2,862,414	+		PP_2515	0.47	-0.8
2,862,414	+		PP_2515	0.47	-2.7
2,862,414	+		PP_2515	0.47	+0.6
2,862,414	+		PP_2515	0.47	-0.0
2,862,440	+		PP_2515	0.51	-0.3
2,862,441	-		PP_2515	0.51	+0.2
2,862,513	+		PP_2515	0.60	-0.5
2,862,682	-		PP_2515	0.82	-1.0
2,862,876	+				-2.9
2,862,895	+				-0.6
2,862,904	-				+1.3
2,862,940	+				-0.2