Strain Fitness in Pseudomonas putida KT2440 around PP_2312

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,640,743	+				-0.7
2,640,822	-				+0.1
2,640,947	-		PP_2311	0.21	+0.1
2,640,968	+		PP_2311	0.23	-0.2
2,640,968	+		PP_2311	0.23	+0.8
2,640,969	-		PP_2311	0.23	-1.7
2,641,073	-		PP_2311	0.36	-0.2
2,641,297	-		PP_2311	0.64	+0.2
2,641,587	-				+0.7
2,641,829	+				+1.2
2,641,877	+				-1.1
2,641,949	-		PP_2312	0.15	+2.2
2,641,949	-				-0.7
2,641,949	-		PP_2312	0.15	+0.6
2,642,016	-		PP_2312	0.20	+0.1
2,642,142	-		PP_2312	0.29	+0.7
2,642,360	+		PP_2312	0.44	+0.5
2,642,360	+		PP_2312	0.44	+1.0
2,642,361	-		PP_2312	0.44	-0.4
2,642,361	-		PP_2312	0.44	+0.4
2,642,361	-		PP_2312	0.44	+0.4
2,642,361	-		PP_2312	0.44	+0.8
2,642,374	+		PP_2312	0.45	+2.0
2,642,374	+		PP_2312	0.45	+1.3
2,642,374	+		PP_2312	0.45	-1.2
2,642,375	-		PP_2312	0.45	+0.7
2,642,375	-		PP_2312	0.45	-0.8
2,642,375	-		PP_2312	0.45	+0.8
2,642,485	+		PP_2312	0.53	+1.3
2,642,485	+		PP_2312	0.53	+0.5
2,642,485	+		PP_2312	0.53	+0.7
2,642,486	-		PP_2312	0.53	+1.1
2,642,486	-		PP_2312	0.53	+0.5
2,642,489	+		PP_2312	0.53	+0.4
2,642,490	-		PP_2312	0.53	+1.2
2,642,490	-		PP_2312	0.53	+0.7
2,642,490	-		PP_2312	0.53	+2.3
2,642,584	+		PP_2312	0.60	+0.1
2,642,585	-				+1.1
2,642,817	+		PP_2312	0.77	+1.9
2,642,818	-		PP_2312	0.77	-0.1
2,642,818	-		PP_2312	0.77	+0.9
2,642,829	-		PP_2312	0.78	+0.8
2,642,939	-		PP_2312	0.85	+1.1
2,642,939	-		PP_2312	0.85	+0.3
2,642,939	-		PP_2312	0.85	+0.1
2,643,088	+				+0.4
2,643,089	-				+1.1
2,643,089	-				+1.3
2,643,092	-				+1.5
2,643,132	-				-0.4
2,643,268	+				-0.2
2,643,269	-				+0.2
2,643,454	-		PP_2313	0.45	-0.2
2,643,547	-		PP_2313	0.66	-0.1
2,643,714	+				-0.1
2,643,714	+				-0.7
2,643,715	-				-0.2
2,643,715	-				+0.1
2,643,715	-				+0.2
2,643,742	-				-0.3
2,643,796	+				+0.4
2,643,796	+				+0.7
2,643,796	+				-0.1
2,643,797	-				-0.8
2,643,797	-				-1.2
2,643,819	-				-0.2
2,643,826	+				-0.1
2,643,827	-				-0.0
2,643,957	+				-0.5
2,643,958	-				+0.3
2,643,958	-				+0.6
2,643,958	-				+1.3
2,643,958	-				-0.3
2,643,958	-				-0.1
2,643,958	-				-1.1
2,643,958	-				+0.7