Strain Fitness in Pseudomonas putida KT2440 around PP_2195

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,500,611	+				+0.5
2,500,611	+				-1.1
2,500,611	+				+0.3
2,500,611	+				+0.9
2,500,612	-				-0.7
2,500,612	-				-0.8
2,500,612	-				+0.3
2,500,699	-		PP_2194	0.14	-0.8
2,500,744	+		PP_2194	0.19	-0.9
2,500,745	-		PP_2194	0.19	-1.3
2,500,751	+		PP_2194	0.19	-0.0
2,500,752	-		PP_2194	0.20	+0.8
2,500,936	+		PP_2194	0.40	+0.4
2,500,970	-		PP_2194	0.44	-0.8
2,501,011	+		PP_2194	0.49	+0.3
2,501,012	-		PP_2194	0.49	+1.7
2,501,163	+		PP_2194	0.66	-0.3
2,501,164	-		PP_2194	0.66	-3.2
2,501,164	-		PP_2194	0.66	+0.2
2,501,164	-		PP_2194	0.66	+0.0
2,501,256	+		PP_2194	0.76	-3.6
2,501,412	+				-0.1
2,501,469	+				-0.7
2,501,470	-				+1.2
2,501,646	+				-0.4
2,501,661	+				-1.8
2,501,706	+		PP_2195	0.13	+1.2
2,501,706	+				+3.4
2,501,706	+		PP_2195	0.13	-1.6
2,501,706	+		PP_2195	0.13	-0.6
2,501,707	-		PP_2195	0.13	+0.1
2,501,983	+		PP_2195	0.39	-0.9
2,501,984	-		PP_2195	0.39	+0.1
2,502,004	+		PP_2195	0.41	-1.6
2,502,005	-		PP_2195	0.41	-1.1
2,502,005	-		PP_2195	0.41	-0.2
2,502,117	+		PP_2195	0.51	-1.5
2,502,118	-		PP_2195	0.51	+0.1
2,502,135	+		PP_2195	0.53	+0.9
2,502,136	-		PP_2195	0.53	-1.3
2,502,136	-		PP_2195	0.53	-0.5
2,502,204	+		PP_2195	0.59	+1.1
2,502,204	+		PP_2195	0.59	-0.1
2,502,204	+		PP_2195	0.59	-0.3
2,502,204	+		PP_2195	0.59	+1.1
2,502,205	-		PP_2195	0.59	-0.5
2,502,205	-		PP_2195	0.59	-0.7
2,502,205	-		PP_2195	0.59	+0.3
2,502,268	-		PP_2195	0.65	+0.4
2,502,268	-		PP_2195	0.65	+0.3
2,502,333	+		PP_2195	0.71	-0.3
2,502,333	+		PP_2195	0.71	-0.6
2,502,333	+		PP_2195	0.71	-1.3
2,502,333	+		PP_2195	0.71	-0.3
2,502,334	-		PP_2195	0.71	+0.6
2,502,334	-		PP_2195	0.71	-1.3
2,502,543	+				+1.1
2,502,543	+				+0.2
2,502,544	-				-0.3
2,502,544	-				-0.3
2,502,544	-				-0.8
2,502,724	+				-0.2
2,502,724	+				-0.5
2,502,724	+				+0.6
2,502,724	+				+0.3
2,502,724	+				+0.0
2,502,724	+				-0.0
2,502,725	-				-0.5
2,502,725	-				+0.6
2,502,725	-				+1.2
2,502,729	+				+0.1
2,502,748	+				+1.6
2,502,748	+				+0.1
2,502,748	+				+0.1
2,502,749	-				-0.2
2,502,749	-				+0.5
2,502,749	-				+0.5
2,502,965	-		PP_2196	0.28	-0.4
2,503,421	-		PP_2196	0.76	+0.5
2,503,606	+				-0.4