Strain Fitness in Pseudomonas putida KT2440 around PP_1751

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,950,751	+		PP_1750	0.61	+0.1
1,950,884	-		PP_1750	0.69	+1.1
1,951,153	+		PP_1750	0.84	+0.3
1,951,154	-		PP_1750	0.84	+0.4
1,951,154	-		PP_1750	0.84	+0.1
1,951,196	-		PP_1750	0.86	-0.3
1,951,196	-		PP_1750	0.86	-0.8
1,951,196	-		PP_1750	0.86	-0.5
1,951,232	+				+1.7
1,951,233	-		PP_1750	0.88	-0.8
1,951,233	-		PP_1750	0.88	-0.7
1,951,317	-				-1.2
1,951,422	+				+0.1
1,951,422	+				+0.1
1,951,422	+				-0.3
1,951,422	+				-0.5
1,951,434	+				+0.8
1,951,445	+				+0.0
1,951,445	+				-0.1
1,951,445	+				-0.2
1,951,445	+				+1.4
1,951,445	+				+0.6
1,951,445	+				+0.3
1,951,446	-				+0.1
1,951,446	-				-0.1
1,951,446	-				-1.2
1,951,446	-				-0.2
1,951,446	-				+0.5
1,951,548	-				-0.9
1,951,548	-				+0.6
1,951,666	+				+1.0
1,951,666	+				+1.8
1,951,739	+				+0.8
1,951,739	+				+0.2
1,951,739	+				+1.6
1,951,739	+				+1.5
1,951,740	-				+1.1
1,951,740	-				-0.4
1,951,740	-				-1.5
1,951,740	-				+1.6
1,951,740	-				+2.1
1,951,740	-				+0.4
1,951,740	-				+0.1
1,951,774	+		PP_1751	0.10	-0.8
1,951,775	-		PP_1751	0.10	+0.4
1,951,799	-		PP_1751	0.11	+0.9
1,951,805	+		PP_1751	0.12	-0.1
1,951,805	+		PP_1751	0.12	+0.3
1,951,806	-		PP_1751	0.12	-0.8
1,951,806	-		PP_1751	0.12	+1.0
1,951,806	-		PP_1751	0.12	+0.7
1,951,806	-		PP_1751	0.12	+0.7
1,951,806	-		PP_1751	0.12	+0.2
1,952,037	+		PP_1751	0.23	+1.3
1,952,037	+		PP_1751	0.23	+0.8
1,952,037	+		PP_1751	0.23	+0.9
1,952,037	+		PP_1751	0.23	+0.0
1,952,038	-		PP_1751	0.24	+0.5
1,952,066	+		PP_1751	0.25	-0.1
1,952,066	+		PP_1751	0.25	+1.4
1,952,066	+		PP_1751	0.25	+0.4
1,952,066	+		PP_1751	0.25	+0.2
1,952,066	+		PP_1751	0.25	+0.8
1,952,067	-		PP_1751	0.25	+0.1
1,952,067	-		PP_1751	0.25	+1.1
1,952,067	-		PP_1751	0.25	+1.0
1,952,155	+		PP_1751	0.29	+1.1
1,952,155	+		PP_1751	0.29	+1.0
1,952,225	-		PP_1751	0.33	+1.6
1,952,307	+		PP_1751	0.37	+1.3
1,952,370	-		PP_1751	0.40	+1.5
1,952,571	-		PP_1751	0.51	+1.3
1,952,630	+		PP_1751	0.54	+0.5
1,952,943	+		PP_1751	0.70	+0.5
1,953,094	+		PP_1751	0.77	+0.8
1,953,094	+		PP_1751	0.77	+0.6
1,953,095	-		PP_1751	0.77	+1.3
1,953,164	+		PP_1751	0.81	+1.2
1,953,164	+		PP_1751	0.81	+1.0
1,953,165	-		PP_1751	0.81	+0.7
1,953,165	-		PP_1751	0.81	-0.5
1,953,165	-		PP_1751	0.81	-2.0
1,953,188	+		PP_1751	0.82	+0.4
1,953,189	-		PP_1751	0.82	+1.6
1,953,248	+		PP_1751	0.85	+1.5
1,953,462	-				-0.4
1,953,474	-				+1.9
1,953,474	-				+1.0
1,953,574	-				+0.8
1,953,623	+				+0.9
1,953,624	-				+0.4
1,953,624	-				-0.2
1,953,624	-				-0.5
1,953,655	+				+1.2
1,953,722	+				-0.8
1,953,722	+				-1.3
1,953,722	+				-0.1
1,953,723	-				+0.1
1,953,770	+				+0.1
1,953,770	+				-1.0
1,953,849	+		PP_1752	0.12	-0.8
1,953,850	-		PP_1752	0.12	+0.8
1,954,001	+		PP_1752	0.22	-2.3
1,954,002	-		PP_1752	0.22	-3.1
1,954,067	-		PP_1752	0.26	-0.4
1,954,235	+		PP_1752	0.37	-2.8
1,954,235	+		PP_1752	0.37	-0.4
1,954,235	+		PP_1752	0.37	-0.2
1,954,235	+		PP_1752	0.37	-0.5
1,954,236	-		PP_1752	0.37	+1.0
1,954,289	+		PP_1752	0.41	-0.2
1,954,289	+		PP_1752	0.41	-0.6
1,954,289	+		PP_1752	0.41	+0.5
1,954,318	-		PP_1752	0.43	+0.7
1,954,496	+		PP_1752	0.55	-0.5