Strain Fitness in Pseudomonas putida KT2440 around PP_0884

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,024,389	+		PP_0883	0.45	+1.6
1,024,400	-		PP_0883	0.46	+0.4
1,024,400	-		PP_0883	0.46	+0.5
1,024,400	-		PP_0883	0.46	-0.5
1,024,422	+		PP_0883	0.47	+0.3
1,024,423	-		PP_0883	0.48	-0.4
1,024,508	-		PP_0883	0.54	+0.0
1,024,618	-		PP_0883	0.62	-0.3
1,024,618	-		PP_0883	0.62	-0.7
1,024,657	+		PP_0883	0.64	-0.0
1,024,687	+		PP_0883	0.67	+1.6
1,024,688	-		PP_0883	0.67	+1.4
1,024,857	+		PP_0883	0.79	+0.1
1,024,858	-		PP_0883	0.79	+0.7
1,024,926	+		PP_0883	0.84	+0.7
1,024,927	-		PP_0883	0.84	+0.1
1,024,929	+		PP_0883	0.84	+0.3
1,024,969	-		PP_0883	0.87	+1.0
1,024,969	-		PP_0883	0.87	+0.2
1,025,138	+				+1.3
1,025,138	+				-1.6
1,025,138	+				+0.9
1,025,151	-				+0.6
1,025,173	+				+0.5
1,025,174	-				+0.9
1,025,174	-				+1.0
1,025,376	+				+0.3
1,025,377	-				-0.8
1,025,377	-				-0.4
1,025,447	-				-2.2
1,025,489	+				+0.5
1,025,607	+		PP_0884	0.15	+0.9
1,025,607	+		PP_0884	0.15	+0.4
1,025,608	-		PP_0884	0.15	-0.3
1,025,730	+		PP_0884	0.22	+0.7
1,025,730	+		PP_0884	0.22	+1.0
1,025,745	+		PP_0884	0.23	+0.5
1,025,745	+		PP_0884	0.23	+0.6
1,025,745	+		PP_0884	0.23	+0.0
1,025,746	-		PP_0884	0.23	-0.5
1,025,746	-		PP_0884	0.23	+0.1
1,025,826	+		PP_0884	0.28	+1.5
1,025,827	-		PP_0884	0.28	+0.7
1,025,827	-		PP_0884	0.28	-0.1
1,025,946	+		PP_0884	0.36	+1.1
1,026,090	+		PP_0884	0.45	+1.0
1,026,090	+		PP_0884	0.45	+0.8
1,026,090	+		PP_0884	0.45	+0.5
1,026,099	+		PP_0884	0.45	+0.9
1,026,099	+		PP_0884	0.45	+1.6
1,026,099	+		PP_0884	0.45	-0.2
1,026,099	+		PP_0884	0.45	+0.5
1,026,100	-		PP_0884	0.46	+1.1
1,026,100	-		PP_0884	0.46	-0.3
1,026,238	+		PP_0884	0.54	+1.0
1,026,288	+		PP_0884	0.57	+0.6
1,026,306	+		PP_0884	0.58	+0.3
1,026,307	-		PP_0884	0.59	+1.5
1,026,401	+		PP_0884	0.64	+1.7
1,026,401	+		PP_0884	0.64	+0.9
1,026,402	-		PP_0884	0.64	-0.5
1,026,402	-		PP_0884	0.64	+0.3
1,026,402	-		PP_0884	0.64	+0.5
1,026,415	-				-1.7
1,026,576	+		PP_0884	0.75	-1.7
1,026,577	-		PP_0884	0.75	+1.2
1,026,711	+		PP_0884	0.84	+0.7
1,026,711	+		PP_0884	0.84	+1.5
1,026,801	+		PP_0884	0.90	+1.0
1,026,801	+		PP_0884	0.90	-0.2
1,026,801	+		PP_0884	0.90	+0.3
1,026,801	+		PP_0884	0.90	-0.4
1,026,801	+		PP_0884	0.90	+1.1
1,026,802	-		PP_0884	0.90	+0.1
1,026,841	-				-0.2
1,026,869	-				+0.2
1,027,037	-				+1.1
1,027,041	+				-0.1
1,027,115	+				+0.4
1,027,115	+				+1.8
1,027,115	+				-0.0
1,027,116	-				-0.7
1,027,136	+				+0.9
1,027,136	+				+0.5
1,027,199	+				+1.7
1,027,231	+				+1.4
1,027,246	+				-0.1
1,027,246	+				+0.2
1,027,247	-				+1.2
1,027,248	+				-1.0
1,027,248	+				+0.1
1,027,248	+				+0.8
1,027,248	+				+1.1
1,027,248	+				-0.2
1,027,249	-				+0.4
1,027,249	-				-0.7
1,027,249	-				+0.4
1,027,249	-				-1.3
1,027,249	-				-0.3
1,027,249	-				-0.2
1,027,334	+		PP_0885	0.14	+0.8
1,027,334	+		PP_0885	0.14	+0.4
1,027,334	+		PP_0885	0.14	-1.1
1,027,335	-		PP_0885	0.14	+0.4
1,027,335	-		PP_0885	0.14	+1.9
1,027,335	-		PP_0885	0.14	+0.8
1,027,379	+		PP_0885	0.16	+0.2
1,027,472	+		PP_0885	0.22	+2.0
1,027,472	+		PP_0885	0.22	+1.8
1,027,472	+		PP_0885	0.22	+0.5
1,027,472	+		PP_0885	0.22	-0.1
1,027,487	+		PP_0885	0.23	-0.2
1,027,487	+		PP_0885	0.23	+0.0
1,027,487	+		PP_0885	0.23	+0.2
1,027,488	-		PP_0885	0.23	-0.9
1,027,510	-		PP_0885	0.24	+0.4
1,027,569	-		PP_0885	0.28	+0.5
1,027,569	-		PP_0885	0.28	-0.2
1,027,743	-		PP_0885	0.39	+0.0
1,027,857	-		PP_0885	0.46	+0.2
1,027,863	+		PP_0885	0.46	+0.4
1,027,863	+		PP_0885	0.46	-0.1
1,027,863	+		PP_0885	0.46	+0.2
1,027,865	+		PP_0885	0.46	-0.2
1,027,866	-		PP_0885	0.46	+0.1
1,027,866	-		PP_0885	0.46	+0.4
1,027,866	-		PP_0885	0.46	+0.0
1,027,918	+		PP_0885	0.49	-0.4