Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0879 and PP_0880 are separated by 10 nucleotides PP_0880 and PP_0881 are separated by 10 nucleotides PP_0881 and PP_0882 are separated by 91 nucleotides
PP_0879: PP_0879 - dipeptide ABC transporter - putative ATP binding subunit, at 1,019,060 to 1,020,028
_0879
PP_0880: PP_0880 - dipeptide ABC transporter - putative membrane subunit, at 1,020,039 to 1,020,965
_0880
PP_0881: PP_0881 - dipeptide ABC transporter - putative membrane subunit, at 1,020,976 to 1,021,986
_0881
PP_0882: PP_0882 - dipeptide ABC transporter - periplasmic binding protein, at 1,022,078 to 1,023,712
_0882
Position (kb) 1020
1021
1022 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1020.141 kb on + strand, within PP_0880 at 1020.141 kb on + strand, within PP_0880 at 1020.141 kb on + strand, within PP_0880 at 1020.142 kb on - strand, within PP_0880 at 1020.166 kb on + strand, within PP_0880 at 1020.421 kb on + strand, within PP_0880 at 1020.421 kb on + strand, within PP_0880 at 1020.905 kb on - strand at 1020.905 kb on - strand at 1020.960 kb on - strand at 1020.960 kb on - strand at 1021.013 kb on + strand at 1021.289 kb on + strand, within PP_0881 at 1021.290 kb on - strand, within PP_0881 at 1021.304 kb on - strand, within PP_0881 at 1021.437 kb on + strand, within PP_0881 at 1021.469 kb on + strand at 1021.579 kb on + strand, within PP_0881 at 1021.579 kb on + strand, within PP_0881 at 1021.580 kb on - strand, within PP_0881 at 1021.580 kb on - strand, within PP_0881 at 1021.580 kb on - strand, within PP_0881 at 1021.631 kb on - strand, within PP_0881 at 1021.631 kb on - strand, within PP_0881 at 1021.781 kb on + strand, within PP_0881 at 1021.781 kb on + strand, within PP_0881 at 1021.782 kb on - strand, within PP_0881 at 1021.782 kb on - strand, within PP_0881 at 1021.907 kb on - strand at 1021.948 kb on + strand at 1021.948 kb on + strand at 1021.997 kb on - strand at 1022.079 kb on + strand at 1022.079 kb on + strand at 1022.080 kb on - strand at 1022.080 kb on - strand at 1022.130 kb on + strand at 1022.130 kb on + strand at 1022.131 kb on - strand at 1022.226 kb on + strand at 1022.226 kb on + strand at 1022.310 kb on + strand, within PP_0882 at 1022.310 kb on + strand, within PP_0882 at 1022.310 kb on + strand, within PP_0882 at 1022.311 kb on - strand, within PP_0882 at 1022.567 kb on + strand, within PP_0882 at 1022.614 kb on + strand, within PP_0882 at 1022.758 kb on + strand, within PP_0882 at 1022.781 kb on + strand, within PP_0882 at 1022.781 kb on + strand, within PP_0882 at 1022.782 kb on - strand, within PP_0882 at 1022.782 kb on - strand, within PP_0882 at 1022.795 kb on - strand, within PP_0882
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 1,020,141 + PP_0880 0.11 +1.3 1,020,141 + PP_0880 0.11 +0.3 1,020,141 + PP_0880 0.11 -0.2 1,020,142 - PP_0880 0.11 -0.5 1,020,166 + PP_0880 0.14 +1.2 1,020,421 + PP_0880 0.41 +0.7 1,020,421 + PP_0880 0.41 +1.3 1,020,905 - +0.1 1,020,905 - +1.0 1,020,960 - +1.8 1,020,960 - +1.4 1,021,013 + -0.3 1,021,289 + PP_0881 0.31 +1.3 1,021,290 - PP_0881 0.31 +0.4 1,021,304 - PP_0881 0.32 +1.8 1,021,437 + PP_0881 0.46 +1.8 1,021,469 + -1.0 1,021,579 + PP_0881 0.60 +1.1 1,021,579 + PP_0881 0.60 +0.6 1,021,580 - PP_0881 0.60 +0.3 1,021,580 - PP_0881 0.60 +1.5 1,021,580 - PP_0881 0.60 +1.1 1,021,631 - PP_0881 0.65 +1.1 1,021,631 - PP_0881 0.65 +0.4 1,021,781 + PP_0881 0.80 +0.2 1,021,781 + PP_0881 0.80 +0.2 1,021,782 - PP_0881 0.80 +0.3 1,021,782 - PP_0881 0.80 +0.1 1,021,907 - +1.2 1,021,948 + +1.6 1,021,948 + +1.3 1,021,997 - +0.2 1,022,079 + +1.3 1,022,079 + +1.2 1,022,080 - +0.5 1,022,080 - +0.5 1,022,130 + +0.9 1,022,130 + +2.0 1,022,131 - -4.3 1,022,226 + +1.1 1,022,226 + -0.1 1,022,310 + PP_0882 0.14 +1.2 1,022,310 + PP_0882 0.14 +0.6 1,022,310 + PP_0882 0.14 +1.0 1,022,311 - PP_0882 0.14 -2.0 1,022,567 + PP_0882 0.30 +1.6 1,022,614 + PP_0882 0.33 +1.4 1,022,758 + PP_0882 0.42 +2.1 1,022,781 + PP_0882 0.43 +1.1 1,022,781 + PP_0882 0.43 +0.3 1,022,782 - PP_0882 0.43 -0.3 1,022,782 - PP_0882 0.43 -1.1 1,022,795 - PP_0882 0.44 +0.6
Or see this region's nucleotide sequence