Strain Fitness in Pseudomonas putida KT2440 around PP_0045

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
49,751	+		PP_0044	0.28	-2.0
49,751	+		PP_0044	0.28	-0.8
49,752	-		PP_0044	0.28	-1.7
49,752	-		PP_0044	0.28	+0.1
49,940	-		PP_0044	0.43	+0.7
49,940	-		PP_0044	0.43	-0.4
49,970	+		PP_0044	0.46	+0.3
49,992	+		PP_0044	0.47	+1.4
50,302	-		PP_0044	0.72	-0.2
50,643	+				+0.1
50,643	+				-0.8
50,644	-				-1.5
50,653	+				+0.1
50,654	-				-0.7
50,654	-				-0.2
50,654	-				-0.3
50,668	+				-0.1
50,935	+		PP_0045	0.17	-0.5
50,936	-		PP_0045	0.17	-0.6
50,936	-		PP_0045	0.17	-1.9
51,099	-		PP_0045	0.30	-0.0
51,099	-		PP_0045	0.30	+1.3
51,099	-		PP_0045	0.30	+1.7
51,099	-		PP_0045	0.30	-1.5
51,143	-		PP_0045	0.33	+0.0
51,153	+		PP_0045	0.34	-0.2
51,153	+		PP_0045	0.34	-0.4
51,153	+		PP_0045	0.34	+0.2
51,153	+		PP_0045	0.34	-0.4
51,154	-		PP_0045	0.34	-1.2
51,154	-		PP_0045	0.34	-0.9
51,154	-		PP_0045	0.34	-0.3
51,154	-		PP_0045	0.34	+0.9
51,164	+		PP_0045	0.35	+0.3
51,164	+		PP_0045	0.35	-1.5
51,164	+		PP_0045	0.35	-2.9
51,165	-		PP_0045	0.35	-2.8
51,219	+		PP_0045	0.39	-0.6
51,219	+		PP_0045	0.39	-0.9
51,220	-		PP_0045	0.39	-2.2
51,220	-		PP_0045	0.39	+0.3
51,263	+		PP_0045	0.43	+1.3
51,264	-				-0.3
51,370	+		PP_0045	0.51	+1.2
51,371	-		PP_0045	0.51	-0.6
51,464	+		PP_0045	0.59	-0.1
51,465	-		PP_0045	0.59	+0.7
51,465	-		PP_0045	0.59	-0.7
51,465	-		PP_0045	0.59	-1.0
51,612	+		PP_0045	0.70	-1.1
51,640	+		PP_0045	0.72	+0.4
51,640	+		PP_0045	0.72	-2.3
51,640	+		PP_0045	0.72	-0.7
51,640	+		PP_0045	0.72	-2.0
51,640	+		PP_0045	0.72	-1.1
51,640	+		PP_0045	0.72	-1.7
51,641	-		PP_0045	0.73	-0.4
51,722	+		PP_0045	0.79	-0.8
51,723	-		PP_0045	0.79	+0.9
51,745	+		PP_0045	0.81	-1.0
51,745	+		PP_0045	0.81	-0.9
51,746	-		PP_0045	0.81	-0.1
51,768	-		PP_0045	0.83	-2.0
51,964	-				+0.4
51,979	+				-0.7
51,980	-				-0.7
52,064	+				-1.2
52,064	+				-2.2
52,093	+				-0.3
52,093	+				-1.7
52,094	-				+0.9
52,237	+				+0.2
52,237	+				-0.1
52,237	+				-2.8
52,261	+				-0.7
52,262	-				+0.7
52,293	-				+0.3
52,311	-				-0.3
52,336	+				-1.4
52,336	+				-0.9
52,336	+				-3.1
52,337	-				-0.7
52,355	-				-0.4
52,363	+				-2.2
52,408	-				-0.1
52,415	+				+0.5
52,415	+				+0.8
52,416	-				-0.3
52,448	+				-0.6
52,448	+				-2.8
52,449	-				+0.5
52,449	-				+0.1
52,453	+				-0.6
52,523	-				-1.6
52,568	+				+0.7
52,568	+		PP_0046	0.13	-1.2
52,569	-		PP_0046	0.13	+0.1
52,588	+		PP_0046	0.14	-0.7
52,649	-		PP_0046	0.19	+0.7
52,657	+		PP_0046	0.20	-3.0
52,658	-		PP_0046	0.20	+0.1
52,735	+		PP_0046	0.25	+0.6
52,735	+		PP_0046	0.25	+3.0
52,762	+		PP_0046	0.27	-0.5
52,762	+		PP_0046	0.27	-0.7
52,763	-		PP_0046	0.27	+0.2
52,787	+		PP_0046	0.29	-1.2
52,787	+		PP_0046	0.29	+0.6
52,787	+		PP_0046	0.29	-0.6
52,787	+		PP_0046	0.29	+1.0