Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4471 and PP_t56 are separated by 396 nucleotides PP_t56 and PP_t55 are separated by 73 nucleotides PP_t55 and PP_t54 are separated by 74 nucleotides PP_t54 and PP_t53 are separated by 71 nucleotides PP_t53 and PP_t52 are separated by 106 nucleotides PP_t52 and PP_4472 are separated by 72 nucleotides PP_4472 and PP_4473 are separated by 167 nucleotides
PP_4471: PP_4471 - Magnesium transporter, at 5,077,313 to 5,078,755
_4471
PP_t56: PP_t56 - tRNA-Arg, at 5,079,152 to 5,079,228
_t56
PP_t55: PP_t55 - tRNA-Arg, at 5,079,302 to 5,079,378
_t55
PP_t54: PP_t54 - tRNA-Arg, at 5,079,453 to 5,079,529
_t54
PP_t53: PP_t53 - tRNA-Arg, at 5,079,601 to 5,079,677
_t53
PP_t52: PP_t52 - tRNA-Ser, at 5,079,784 to 5,079,874
_t52
PP_4472: PP_4472 - carbon storage regulator, at 5,079,947 to 5,080,135
_4472
PP_4473: PP_4473 - aspartokinase, at 5,080,303 to 5,081,538
_4473
Position (kb) 5079
5080 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5078.544 kb on + strand, within PP_4471 at 5078.545 kb on - strand, within PP_4471 at 5078.545 kb on - strand, within PP_4471 at 5078.545 kb on - strand, within PP_4471 at 5078.545 kb on - strand, within PP_4471 at 5078.744 kb on + strand at 5078.818 kb on - strand at 5078.818 kb on - strand at 5078.837 kb on - strand at 5078.840 kb on + strand at 5078.840 kb on + strand at 5078.840 kb on + strand at 5078.841 kb on - strand at 5078.841 kb on - strand at 5078.847 kb on + strand at 5078.847 kb on + strand at 5078.899 kb on + strand at 5078.899 kb on + strand at 5078.899 kb on + strand at 5078.899 kb on + strand at 5078.900 kb on - strand at 5078.900 kb on - strand at 5078.900 kb on - strand at 5078.900 kb on - strand at 5078.907 kb on + strand at 5078.907 kb on + strand at 5078.907 kb on + strand at 5078.908 kb on - strand at 5078.908 kb on - strand at 5078.908 kb on - strand at 5078.908 kb on - strand at 5078.981 kb on + strand at 5079.051 kb on - strand at 5079.051 kb on - strand at 5079.051 kb on - strand at 5079.051 kb on - strand at 5079.064 kb on + strand at 5079.076 kb on + strand at 5079.077 kb on - strand at 5079.077 kb on - strand at 5079.127 kb on - strand at 5079.127 kb on - strand at 5079.127 kb on - strand at 5079.151 kb on - strand at 5079.151 kb on - strand at 5079.207 kb on + strand, within PP_t56 at 5079.207 kb on + strand, within PP_t56 at 5079.237 kb on - strand at 5079.243 kb on - strand at 5079.243 kb on - strand at 5079.264 kb on - strand at 5079.370 kb on + strand, within PP_t55 at 5079.554 kb on - strand at 5079.695 kb on - strand at 5079.697 kb on - strand at 5079.697 kb on - strand at 5080.039 kb on + strand, within PP_4472 at 5080.040 kb on - strand, within PP_4472 at 5080.135 kb on + strand at 5080.135 kb on + strand at 5080.135 kb on + strand at 5080.135 kb on + strand at 5080.135 kb on + strand at 5080.136 kb on - strand at 5080.136 kb on - strand at 5080.147 kb on + strand at 5080.147 kb on + strand at 5080.166 kb on + strand at 5080.304 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 5,078,544 + PP_4471 0.85 -1.2 5,078,545 - PP_4471 0.85 -1.4 5,078,545 - PP_4471 0.85 -1.3 5,078,545 - PP_4471 0.85 +0.1 5,078,545 - PP_4471 0.85 -0.5 5,078,744 + +1.0 5,078,818 - +0.5 5,078,818 - -0.4 5,078,837 - -0.9 5,078,840 + -1.4 5,078,840 + +0.1 5,078,840 + +1.2 5,078,841 - -2.1 5,078,841 - +0.8 5,078,847 + -1.8 5,078,847 + +0.2 5,078,899 + -0.1 5,078,899 + -1.1 5,078,899 + +0.4 5,078,899 + -0.3 5,078,900 - -2.3 5,078,900 - -0.3 5,078,900 - -0.4 5,078,900 - -1.1 5,078,907 + -0.1 5,078,907 + +0.7 5,078,907 + -0.9 5,078,908 - -0.3 5,078,908 - -0.9 5,078,908 - +1.8 5,078,908 - +0.4 5,078,981 + -0.8 5,079,051 - -0.9 5,079,051 - +1.3 5,079,051 - -0.1 5,079,051 - +0.9 5,079,064 + -2.8 5,079,076 + -2.8 5,079,077 - +0.0 5,079,077 - -0.0 5,079,127 - -0.1 5,079,127 - +1.0 5,079,127 - +0.0 5,079,151 - -1.0 5,079,151 - -0.6 5,079,207 + PP_t56 0.71 -0.3 5,079,207 + PP_t56 0.71 -0.1 5,079,237 - -0.6 5,079,243 - -1.6 5,079,243 - +0.4 5,079,264 - -1.6 5,079,370 + PP_t55 0.88 -0.9 5,079,554 - +1.0 5,079,695 - +1.9 5,079,697 - -1.8 5,079,697 - -1.9 5,080,039 + PP_4472 0.49 -2.4 5,080,040 - PP_4472 0.49 +0.9 5,080,135 + -1.5 5,080,135 + +1.2 5,080,135 + +0.2 5,080,135 + +0.2 5,080,135 + -1.6 5,080,136 - +1.7 5,080,136 - +0.2 5,080,147 + -2.4 5,080,147 + +0.8 5,080,166 + -2.5 5,080,304 + -0.7
Or see this region's nucleotide sequence